Experiment: Growth at pH6 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4868 and PP_4869 are separated by 3 nucleotides PP_4869 and PP_4870 are separated by 102 nucleotides PP_4870 and PP_4871 are separated by 347 nucleotides
PP_4868: PP_4868 - Nicotinate phosphoribosyltransferase, at 5,534,984 to 5,536,192
_4868
PP_4869: PP_4869 - NH(3)-dependent NAD(+) synthetase, at 5,536,196 to 5,537,023
_4869
PP_4870: PP_4870 - Azurin, at 5,537,126 to 5,537,575
_4870
PP_4871: PP_4871 - putative lysine decarboxylase family protein, at 5,537,923 to 5,538,510
_4871
Position (kb) 5536
5537
5538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5535.282 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.443 kb on + strand, within PP_4868 at 5535.444 kb on - strand, within PP_4868 at 5535.631 kb on + strand, within PP_4868 at 5535.812 kb on + strand, within PP_4868 at 5536.154 kb on + strand at 5536.167 kb on + strand at 5536.167 kb on + strand at 5537.024 kb on + strand at 5537.024 kb on + strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.057 kb on + strand at 5537.127 kb on + strand at 5537.127 kb on + strand at 5537.191 kb on - strand, within PP_4870 at 5537.191 kb on - strand, within PP_4870 at 5537.301 kb on + strand, within PP_4870 at 5537.302 kb on - strand, within PP_4870 at 5537.472 kb on + strand, within PP_4870 at 5537.473 kb on - strand, within PP_4870 at 5537.558 kb on + strand at 5537.599 kb on + strand at 5537.599 kb on + strand at 5537.642 kb on + strand at 5537.643 kb on - strand at 5537.697 kb on + strand at 5537.697 kb on + strand at 5537.765 kb on + strand at 5537.765 kb on + strand at 5537.795 kb on - strand at 5537.931 kb on - strand at 5537.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate remove 5,535,282 - PP_4868 0.25 +0.4 5,535,388 - PP_4868 0.33 -0.4 5,535,388 - PP_4868 0.33 +0.6 5,535,388 - PP_4868 0.33 -1.5 5,535,388 - PP_4868 0.33 +1.2 5,535,443 + PP_4868 0.38 +0.3 5,535,444 - PP_4868 0.38 -0.3 5,535,631 + PP_4868 0.54 +0.1 5,535,812 + PP_4868 0.68 -1.1 5,536,154 + -1.7 5,536,167 + +1.0 5,536,167 + +2.2 5,537,024 + -1.7 5,537,024 + -2.4 5,537,025 - +0.4 5,537,025 - -0.8 5,537,025 - -2.2 5,537,025 - +0.3 5,537,025 - -0.9 5,537,057 + +0.0 5,537,127 + +2.3 5,537,127 + +0.2 5,537,191 - PP_4870 0.14 -1.1 5,537,191 - PP_4870 0.14 -1.3 5,537,301 + PP_4870 0.39 -0.9 5,537,302 - PP_4870 0.39 -3.1 5,537,472 + PP_4870 0.77 -1.1 5,537,473 - PP_4870 0.77 -1.8 5,537,558 + +0.4 5,537,599 + +0.5 5,537,599 + +0.8 5,537,642 + +1.6 5,537,643 - -0.4 5,537,697 + -0.3 5,537,697 + -1.4 5,537,765 + +0.3 5,537,765 + -1.1 5,537,795 - +0.2 5,537,931 - +0.3 5,537,981 - +0.0
Or see this region's nucleotide sequence