Strain Fitness in Pseudomonas putida KT2440 around PP_5715

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4825 and PP_5714 are separated by 10 nucleotidesPP_5714 and PP_5715 overlap by 8 nucleotidesPP_5715 and PP_5716 are separated by 51 nucleotidesPP_5716 and PP_4826 are separated by 118 nucleotides PP_4825: PP_4825 - Membrane protein, MarC family, at 5,489,519 to 5,490,115 _4825 PP_5714: PP_5714 - conserved protein of unknown function, at 5,490,126 to 5,490,782 _5714 PP_5715: PP_5715 - protein of unknown function, at 5,490,775 to 5,491,464 _5715 PP_5716: PP_5716 - conserved protein of unknown function, at 5,491,516 to 5,492,199 _5716 PP_4826: PP_4826 - Precorrin-3B C17-methyltransferase, at 5,492,318 to 5,494,015 _4826 Position (kb) 5490 5491 5492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5489.968 kb on - strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.981 kb on + strand, within PP_4825at 5489.982 kb on - strand, within PP_4825at 5489.982 kb on - strand, within PP_4825at 5489.982 kb on - strand, within PP_4825at 5489.985 kb on + strand, within PP_4825at 5489.986 kb on - strand, within PP_4825at 5490.051 kb on + strand, within PP_4825at 5490.052 kb on - strand, within PP_4825at 5490.052 kb on - strand, within PP_4825at 5490.052 kb on - strand, within PP_4825at 5490.085 kb on + strandat 5490.102 kb on - strandat 5490.113 kb on + strandat 5490.127 kb on + strandat 5490.127 kb on + strandat 5490.147 kb on - strandat 5490.255 kb on + strand, within PP_5714at 5490.256 kb on - strand, within PP_5714at 5490.256 kb on - strand, within PP_5714at 5490.256 kb on - strand, within PP_5714at 5490.472 kb on + strand, within PP_5714at 5490.472 kb on + strand, within PP_5714at 5490.605 kb on - strand, within PP_5714at 5490.708 kb on - strand, within PP_5714at 5490.847 kb on - strand, within PP_5715at 5490.899 kb on + strandat 5490.900 kb on - strand, within PP_5715at 5490.988 kb on - strand, within PP_5715at 5490.988 kb on - strand, within PP_5715at 5491.027 kb on + strand, within PP_5715at 5491.028 kb on - strand, within PP_5715at 5491.028 kb on - strand, within PP_5715at 5491.065 kb on + strand, within PP_5715at 5491.066 kb on - strand, within PP_5715at 5491.096 kb on + strand, within PP_5715at 5491.096 kb on + strand, within PP_5715at 5491.133 kb on + strand, within PP_5715at 5491.134 kb on - strand, within PP_5715at 5491.301 kb on + strand, within PP_5715at 5491.302 kb on - strand, within PP_5715at 5491.302 kb on - strand, within PP_5715at 5491.302 kb on - strand, within PP_5715at 5491.355 kb on + strand, within PP_5715at 5491.355 kb on + strand, within PP_5715at 5491.355 kb on + strand, within PP_5715at 5491.356 kb on - strand, within PP_5715at 5491.452 kb on - strandat 5491.452 kb on - strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.468 kb on + strandat 5491.469 kb on - strandat 5491.469 kb on - strandat 5491.469 kb on - strandat 5491.509 kb on + strandat 5491.571 kb on - strandat 5491.670 kb on + strand, within PP_5716at 5491.670 kb on + strand, within PP_5716at 5491.671 kb on - strand, within PP_5716at 5491.671 kb on - strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.876 kb on + strand, within PP_5716at 5491.877 kb on - strand, within PP_5716at 5491.898 kb on + strand, within PP_5716at 5491.898 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.947 kb on + strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.948 kb on - strand, within PP_5716at 5491.969 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.012 kb on + strand, within PP_5716at 5492.013 kb on - strand, within PP_5716at 5492.018 kb on + strand, within PP_5716at 5492.018 kb on + strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.019 kb on - strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.049 kb on + strand, within PP_5716at 5492.050 kb on - strand, within PP_5716at 5492.050 kb on - strand, within PP_5716at 5492.116 kb on + strand, within PP_5716at 5492.116 kb on + strand, within PP_5716at 5492.237 kb on + strandat 5492.237 kb on + strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.269 kb on - strandat 5492.334 kb on + strandat 5492.335 kb on - strandat 5492.335 kb on - strandat 5492.348 kb on - strandat 5492.348 kb on - strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.349 kb on + strandat 5492.389 kb on + strandat 5492.390 kb on - strandat 5492.390 kb on - strandat 5492.390 kb on - strandat 5492.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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5,489,968 - PP_4825 0.75 +0.3
5,489,981 + PP_4825 0.77 +0.8
5,489,981 + PP_4825 0.77 -0.8
5,489,981 + PP_4825 0.77 +1.2
5,489,981 + PP_4825 0.77 +0.7
5,489,981 + PP_4825 0.77 +0.4
5,489,981 + PP_4825 0.77 +0.0
5,489,981 + PP_4825 0.77 -0.4
5,489,981 + PP_4825 0.77 -0.6
5,489,981 + PP_4825 0.77 +0.9
5,489,982 - PP_4825 0.78 +0.6
5,489,982 - PP_4825 0.78 +0.6
5,489,982 - PP_4825 0.78 +1.4
5,489,985 + PP_4825 0.78 -0.7
5,489,986 - PP_4825 0.78 +1.1
5,490,051 + PP_4825 0.89 -1.5
5,490,052 - PP_4825 0.89 +0.5
5,490,052 - PP_4825 0.89 +0.8
5,490,052 - PP_4825 0.89 +1.9
5,490,085 + +0.5
5,490,102 - +1.2
5,490,113 + -1.8
5,490,127 + -3.4
5,490,127 + +1.0
5,490,147 - +1.2
5,490,255 + PP_5714 0.20 -0.8
5,490,256 - PP_5714 0.20 +1.4
5,490,256 - PP_5714 0.20 -0.3
5,490,256 - PP_5714 0.20 -0.1
5,490,472 + PP_5714 0.53 +1.2
5,490,472 + PP_5714 0.53 +0.1
5,490,605 - PP_5714 0.73 -2.4
5,490,708 - PP_5714 0.89 +0.5
5,490,847 - PP_5715 0.10 -0.6
5,490,899 + +2.5
5,490,900 - PP_5715 0.18 -0.1
5,490,988 - PP_5715 0.31 +0.3
5,490,988 - PP_5715 0.31 +2.2
5,491,027 + PP_5715 0.37 -0.1
5,491,028 - PP_5715 0.37 +0.1
5,491,028 - PP_5715 0.37 +2.1
5,491,065 + PP_5715 0.42 -2.4
5,491,066 - PP_5715 0.42 +1.3
5,491,096 + PP_5715 0.47 -0.1
5,491,096 + PP_5715 0.47 -0.1
5,491,133 + PP_5715 0.52 +0.6
5,491,134 - PP_5715 0.52 +0.8
5,491,301 + PP_5715 0.76 +1.4
5,491,302 - PP_5715 0.76 +0.6
5,491,302 - PP_5715 0.76 -1.7
5,491,302 - PP_5715 0.76 +3.1
5,491,355 + PP_5715 0.84 -3.2
5,491,355 + PP_5715 0.84 +1.7
5,491,355 + PP_5715 0.84 +0.2
5,491,356 - PP_5715 0.84 +0.8
5,491,452 - -0.6
5,491,452 - -1.1
5,491,468 + -0.5
5,491,468 + -1.5
5,491,468 + +0.3
5,491,468 + +0.5
5,491,469 - +0.3
5,491,469 - -0.2
5,491,469 - +0.2
5,491,509 + -0.1
5,491,571 - -1.4
5,491,670 + PP_5716 0.23 +0.4
5,491,670 + PP_5716 0.23 -0.9
5,491,671 - PP_5716 0.23 -3.6
5,491,671 - PP_5716 0.23 +1.8
5,491,876 + PP_5716 0.53 +2.2
5,491,876 + PP_5716 0.53 -2.8
5,491,876 + PP_5716 0.53 -3.4
5,491,877 - PP_5716 0.53 +1.4
5,491,898 + PP_5716 0.56 -1.0
5,491,898 + PP_5716 0.56 -0.9
5,491,947 + PP_5716 0.63 -2.3
5,491,947 + PP_5716 0.63 -0.7
5,491,947 + PP_5716 0.63 +0.2
5,491,948 - PP_5716 0.63 -3.2
5,491,948 - PP_5716 0.63 +0.2
5,491,948 - PP_5716 0.63 -2.1
5,491,948 - PP_5716 0.63 -0.2
5,491,948 - PP_5716 0.63 +0.5
5,491,969 + PP_5716 0.66 +0.2
5,492,012 + PP_5716 0.73 -1.1
5,492,012 + PP_5716 0.73 -2.8
5,492,012 + PP_5716 0.73 +1.3
5,492,012 + PP_5716 0.73 +1.0
5,492,012 + PP_5716 0.73 -0.0
5,492,013 - PP_5716 0.73 -0.5
5,492,018 + PP_5716 0.73 +0.1
5,492,018 + PP_5716 0.73 -1.7
5,492,019 - PP_5716 0.74 -0.2
5,492,019 - PP_5716 0.74 +1.4
5,492,019 - PP_5716 0.74 +0.3
5,492,019 - PP_5716 0.74 -0.3
5,492,019 - PP_5716 0.74 -2.0
5,492,049 + PP_5716 0.78 -1.8
5,492,049 + PP_5716 0.78 -0.8
5,492,049 + PP_5716 0.78 -1.2
5,492,050 - PP_5716 0.78 +1.2
5,492,050 - PP_5716 0.78 +0.5
5,492,116 + PP_5716 0.88 +0.0
5,492,116 + PP_5716 0.88 -1.3
5,492,237 + -0.1
5,492,237 + -0.1
5,492,269 - -0.8
5,492,269 - +1.2
5,492,269 - +0.3
5,492,269 - -2.2
5,492,334 + +0.5
5,492,335 - -2.8
5,492,335 - -3.3
5,492,348 - +0.8
5,492,348 - +0.4
5,492,349 + -0.8
5,492,349 + +1.2
5,492,349 + -0.1
5,492,349 + -2.6
5,492,389 + -0.7
5,492,390 - -1.8
5,492,390 - -1.7
5,492,390 - -0.2
5,492,460 - -2.8

Or see this region's nucleotide sequence