Strain Fitness in Pseudomonas putida KT2440 around PP_5449

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5448 and PP_5449 are separated by 65 nucleotidesPP_5449 and PP_0639 are separated by 199 nucleotidesPP_0639 and PP_0640 overlap by 4 nucleotides PP_5448: PP_5448 - conserved protein of unknown function, at 747,667 to 747,882 _5448 PP_5449: PP_5449 - conserved exported protein of unknown function, at 747,948 to 748,766 _5449 PP_0639: PP_0639 - conserved protein of unknown function, at 748,966 to 749,682 _0639 PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863 _0640 Position (kb) 747 748 749Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 746.965 kb on + strandat 746.965 kb on + strandat 746.984 kb on + strandat 746.984 kb on + strandat 746.985 kb on - strandat 746.985 kb on - strandat 746.985 kb on - strandat 746.985 kb on - strandat 746.985 kb on - strandat 746.985 kb on - strandat 746.985 kb on - strandat 747.037 kb on + strandat 747.037 kb on + strandat 747.038 kb on - strandat 747.063 kb on + strandat 747.064 kb on - strandat 747.064 kb on - strandat 747.168 kb on + strandat 747.230 kb on - strandat 747.259 kb on + strandat 747.259 kb on + strandat 747.259 kb on + strandat 747.268 kb on - strandat 747.305 kb on - strandat 747.305 kb on - strandat 747.367 kb on + strandat 747.368 kb on - strandat 747.405 kb on + strandat 747.405 kb on + strandat 747.405 kb on + strandat 747.406 kb on - strandat 747.497 kb on + strandat 747.498 kb on - strandat 747.498 kb on - strandat 747.498 kb on - strandat 747.498 kb on - strandat 747.511 kb on + strandat 747.511 kb on + strandat 747.512 kb on - strandat 747.683 kb on + strandat 747.720 kb on + strand, within PP_5448at 747.720 kb on + strand, within PP_5448at 747.721 kb on - strand, within PP_5448at 747.787 kb on + strand, within PP_5448at 747.792 kb on + strand, within PP_5448at 747.792 kb on + strand, within PP_5448at 747.886 kb on + strandat 747.954 kb on - strandat 747.977 kb on - strandat 748.034 kb on + strand, within PP_5449at 748.034 kb on + strand, within PP_5449at 748.035 kb on - strand, within PP_5449at 748.035 kb on - strand, within PP_5449at 748.039 kb on - strand, within PP_5449at 748.039 kb on - strand, within PP_5449at 748.110 kb on - strand, within PP_5449at 748.127 kb on + strand, within PP_5449at 748.253 kb on + strand, within PP_5449at 748.312 kb on - strand, within PP_5449at 748.328 kb on - strand, within PP_5449at 748.494 kb on - strand, within PP_5449at 748.566 kb on + strand, within PP_5449at 748.738 kb on - strandat 748.773 kb on - strandat 748.812 kb on + strandat 748.812 kb on + strandat 748.879 kb on + strandat 748.880 kb on - strandat 749.101 kb on - strand, within PP_0639at 749.141 kb on + strand, within PP_0639at 749.239 kb on - strand, within PP_0639at 749.279 kb on - strand, within PP_0639at 749.308 kb on + strand, within PP_0639at 749.309 kb on - strand, within PP_0639at 749.309 kb on - strand, within PP_0639at 749.315 kb on - strand, within PP_0639at 749.355 kb on + strand, within PP_0639at 749.421 kb on - strand, within PP_0639at 749.652 kb on - strandat 749.652 kb on - strandat 749.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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746,965 + -0.0
746,965 + +1.1
746,984 + +0.8
746,984 + -0.3
746,985 - +1.1
746,985 - +0.7
746,985 - +0.9
746,985 - +1.4
746,985 - -2.3
746,985 - +0.7
746,985 - +1.2
747,037 + +0.8
747,037 + +0.2
747,038 - +0.3
747,063 + +1.2
747,064 - -1.7
747,064 - -0.5
747,168 + -1.9
747,230 - -2.1
747,259 + -0.5
747,259 + -0.4
747,259 + +0.1
747,268 - -0.3
747,305 - -1.4
747,305 - -0.1
747,367 + +0.4
747,368 - +3.4
747,405 + +0.6
747,405 + -0.4
747,405 + +1.0
747,406 - -1.2
747,497 + -1.6
747,498 - -0.1
747,498 - +0.1
747,498 - +2.5
747,498 - -1.3
747,511 + -1.4
747,511 + -1.7
747,512 - -0.4
747,683 + +1.4
747,720 + PP_5448 0.25 +2.0
747,720 + PP_5448 0.25 -0.6
747,721 - PP_5448 0.25 -3.0
747,787 + PP_5448 0.56 -1.2
747,792 + PP_5448 0.58 +3.6
747,792 + PP_5448 0.58 +1.1
747,886 + +1.6
747,954 - -1.8
747,977 - -1.6
748,034 + PP_5449 0.11 -0.3
748,034 + PP_5449 0.11 -2.7
748,035 - PP_5449 0.11 -0.3
748,035 - PP_5449 0.11 -2.4
748,039 - PP_5449 0.11 -1.6
748,039 - PP_5449 0.11 -2.8
748,110 - PP_5449 0.20 +0.8
748,127 + PP_5449 0.22 -2.1
748,253 + PP_5449 0.37 -3.2
748,312 - PP_5449 0.44 -1.0
748,328 - PP_5449 0.46 -2.1
748,494 - PP_5449 0.67 +0.8
748,566 + PP_5449 0.75 -2.1
748,738 - +2.3
748,773 - +0.0
748,812 + -2.6
748,812 + +0.5
748,879 + -1.5
748,880 - +1.5
749,101 - PP_0639 0.19 +0.9
749,141 + PP_0639 0.24 -2.2
749,239 - PP_0639 0.38 +0.0
749,279 - PP_0639 0.44 +0.2
749,308 + PP_0639 0.48 +0.8
749,309 - PP_0639 0.48 -1.0
749,309 - PP_0639 0.48 +0.1
749,315 - PP_0639 0.49 +0.6
749,355 + PP_0639 0.54 +1.2
749,421 - PP_0639 0.63 +0.1
749,652 - +0.3
749,652 - -2.8
749,704 + +0.6

Or see this region's nucleotide sequence