Experiment: Growth at pH6 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4831 and PP_4832 overlap by 4 nucleotides PP_4832 and PP_4833 are separated by 134 nucleotides PP_4833 and PP_4834 are separated by 26 nucleotides
PP_4831: PP_4831 - putative cobalt-precorrin-6A synthase, at 5,498,132 to 5,499,226
_4831
PP_4832: PP_4832 - Precorrin-6x reductase, at 5,499,223 to 5,499,942
_4832
PP_4833: PP_4833 - SURF1 domain protein, at 5,500,077 to 5,500,508
_4833
PP_4834: PP_4834 - SPFH domain/Band 7 family protein, at 5,500,535 to 5,501,389
_4834
Position (kb) 5500
5501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.391 kb on + strand, within PP_4832 at 5499.439 kb on + strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.940 kb on + strand at 5499.974 kb on + strand at 5499.974 kb on + strand at 5499.974 kb on + strand at 5500.035 kb on - strand at 5500.071 kb on - strand at 5500.151 kb on - strand, within PP_4833 at 5500.151 kb on - strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833 at 5500.241 kb on - strand, within PP_4833 at 5500.517 kb on + strand at 5500.518 kb on - strand at 5500.691 kb on + strand, within PP_4834 at 5500.691 kb on + strand, within PP_4834 at 5500.691 kb on + strand, within PP_4834 at 5500.812 kb on + strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.813 kb on - strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.835 kb on + strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5500.836 kb on - strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.261 kb on + strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.262 kb on - strand, within PP_4834 at 5501.265 kb on + strand, within PP_4834 at 5501.265 kb on + strand, within PP_4834 at 5501.279 kb on + strand, within PP_4834 at 5501.279 kb on + strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.280 kb on - strand, within PP_4834 at 5501.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate remove 5,499,302 - PP_4832 0.11 -0.8 5,499,302 - PP_4832 0.11 -2.1 5,499,302 - PP_4832 0.11 +1.2 5,499,302 - PP_4832 0.11 -0.2 5,499,391 + PP_4832 0.23 -1.9 5,499,439 + PP_4832 0.30 -1.6 5,499,440 - PP_4832 0.30 +0.2 5,499,440 - PP_4832 0.30 +0.6 5,499,440 - PP_4832 0.30 -1.4 5,499,940 + -1.1 5,499,974 + +0.7 5,499,974 + -0.8 5,499,974 + +0.2 5,500,035 - +1.0 5,500,071 - +0.1 5,500,151 - PP_4833 0.17 -0.9 5,500,151 - PP_4833 0.17 +1.2 5,500,187 + PP_4833 0.25 -2.9 5,500,187 + PP_4833 0.25 -3.5 5,500,187 + PP_4833 0.25 -0.1 5,500,241 - PP_4833 0.38 -1.9 5,500,517 + +1.9 5,500,518 - -1.1 5,500,691 + PP_4834 0.18 -1.7 5,500,691 + PP_4834 0.18 +0.4 5,500,691 + PP_4834 0.18 +1.5 5,500,812 + PP_4834 0.32 -1.0 5,500,813 - PP_4834 0.33 +0.4 5,500,813 - PP_4834 0.33 -1.8 5,500,813 - PP_4834 0.33 -0.8 5,500,835 + PP_4834 0.35 +1.6 5,500,835 + PP_4834 0.35 +0.4 5,500,835 + PP_4834 0.35 +0.1 5,500,835 + PP_4834 0.35 +0.8 5,500,835 + PP_4834 0.35 +1.0 5,500,835 + PP_4834 0.35 +1.2 5,500,835 + PP_4834 0.35 -1.4 5,500,836 - PP_4834 0.35 +0.1 5,500,836 - PP_4834 0.35 -0.2 5,500,836 - PP_4834 0.35 +1.4 5,500,836 - PP_4834 0.35 -2.4 5,501,261 + PP_4834 0.85 +2.1 5,501,261 + PP_4834 0.85 +0.4 5,501,261 + PP_4834 0.85 +0.8 5,501,261 + PP_4834 0.85 -0.8 5,501,262 - PP_4834 0.85 +2.0 5,501,262 - PP_4834 0.85 +0.8 5,501,262 - PP_4834 0.85 +1.3 5,501,262 - PP_4834 0.85 +0.5 5,501,265 + PP_4834 0.85 -0.0 5,501,265 + PP_4834 0.85 -0.2 5,501,279 + PP_4834 0.87 -2.3 5,501,279 + PP_4834 0.87 +1.2 5,501,280 - PP_4834 0.87 +0.4 5,501,280 - PP_4834 0.87 +1.4 5,501,280 - PP_4834 0.87 -1.9 5,501,280 - PP_4834 0.87 +0.9 5,501,448 + -2.2
Or see this region's nucleotide sequence