Strain Fitness in Pseudomonas putida KT2440 around PP_4508

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4507 and PP_4508 overlap by 44 nucleotidesPP_4508 and PP_4509 are separated by 234 nucleotidesPP_4509 and PP_4510 are separated by 38 nucleotides PP_4507: PP_4507 - potassium transporter, at 5,120,358 to 5,121,812 _4507 PP_4508: PP_4508 - putative transcriptional regulator, AraC family, at 5,121,769 to 5,122,749 _4508 PP_4509: PP_4509 - conserved protein of unknown function, at 5,122,984 to 5,123,295 _4509 PP_4510: PP_4510 - conserved protein of unknown function, at 5,123,334 to 5,124,131 _4510 Position (kb) 5121 5122 5123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5120.780 kb on + strand, within PP_4507at 5120.922 kb on + strand, within PP_4507at 5120.923 kb on - strand, within PP_4507at 5120.938 kb on + strand, within PP_4507at 5121.009 kb on - strand, within PP_4507at 5121.085 kb on + strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.086 kb on - strand, within PP_4507at 5121.123 kb on + strand, within PP_4507at 5121.124 kb on - strand, within PP_4507at 5121.127 kb on + strand, within PP_4507at 5121.128 kb on - strand, within PP_4507at 5121.228 kb on + strand, within PP_4507at 5121.228 kb on + strand, within PP_4507at 5121.234 kb on + strand, within PP_4507at 5121.234 kb on + strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.235 kb on - strand, within PP_4507at 5121.327 kb on + strand, within PP_4507at 5121.342 kb on - strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.438 kb on + strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.439 kb on - strand, within PP_4507at 5121.659 kb on - strand, within PP_4507at 5121.845 kb on + strandat 5121.920 kb on + strand, within PP_4508at 5121.921 kb on - strand, within PP_4508at 5121.959 kb on + strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5121.960 kb on - strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.301 kb on + strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.302 kb on - strand, within PP_4508at 5122.466 kb on + strand, within PP_4508at 5122.467 kb on - strand, within PP_4508at 5122.524 kb on - strand, within PP_4508at 5122.577 kb on + strand, within PP_4508at 5122.844 kb on + strandat 5122.845 kb on - strandat 5122.875 kb on + strandat 5122.875 kb on + strandat 5122.876 kb on - strandat 5122.890 kb on + strandat 5122.890 kb on + strandat 5122.890 kb on + strandat 5122.902 kb on + strandat 5122.902 kb on + strandat 5122.902 kb on + strandat 5122.921 kb on + strandat 5122.922 kb on - strandat 5122.922 kb on - strandat 5122.948 kb on + strandat 5122.948 kb on + strandat 5122.949 kb on - strandat 5122.964 kb on - strandat 5122.964 kb on - strandat 5122.966 kb on + strandat 5123.023 kb on + strand, within PP_4509at 5123.023 kb on + strand, within PP_4509at 5123.029 kb on + strand, within PP_4509at 5123.030 kb on - strand, within PP_4509at 5123.032 kb on + strand, within PP_4509at 5123.033 kb on - strand, within PP_4509at 5123.096 kb on + strand, within PP_4509at 5123.097 kb on - strand, within PP_4509at 5123.110 kb on + strand, within PP_4509at 5123.111 kb on - strand, within PP_4509at 5123.220 kb on + strand, within PP_4509at 5123.220 kb on + strand, within PP_4509at 5123.233 kb on + strand, within PP_4509at 5123.233 kb on + strand, within PP_4509at 5123.277 kb on - strandat 5123.293 kb on + strandat 5123.293 kb on + strandat 5123.294 kb on - strandat 5123.335 kb on + strandat 5123.384 kb on - strandat 5123.495 kb on + strand, within PP_4510at 5123.495 kb on + strand, within PP_4510at 5123.496 kb on - strand, within PP_4510at 5123.496 kb on - strand, within PP_4510at 5123.496 kb on - strand, within PP_4510at 5123.602 kb on + strand, within PP_4510at 5123.621 kb on - strand, within PP_4510at 5123.626 kb on + strand, within PP_4510at 5123.626 kb on + strand, within PP_4510at 5123.626 kb on + strand, within PP_4510at 5123.684 kb on - strand, within PP_4510at 5123.684 kb on - strand, within PP_4510

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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5,120,780 + PP_4507 0.29 -1.6
5,120,922 + PP_4507 0.39 -0.4
5,120,923 - PP_4507 0.39 -1.4
5,120,938 + PP_4507 0.40 +2.3
5,121,009 - PP_4507 0.45 -1.1
5,121,085 + PP_4507 0.50 -1.3
5,121,086 - PP_4507 0.50 +0.6
5,121,086 - PP_4507 0.50 -0.5
5,121,086 - PP_4507 0.50 -1.1
5,121,086 - PP_4507 0.50 -0.8
5,121,123 + PP_4507 0.53 +0.0
5,121,124 - PP_4507 0.53 -1.2
5,121,127 + PP_4507 0.53 +1.3
5,121,128 - PP_4507 0.53 -1.8
5,121,228 + PP_4507 0.60 +0.1
5,121,228 + PP_4507 0.60 +1.2
5,121,234 + PP_4507 0.60 -3.3
5,121,234 + PP_4507 0.60 -0.2
5,121,235 - PP_4507 0.60 +1.0
5,121,235 - PP_4507 0.60 -1.9
5,121,235 - PP_4507 0.60 +0.0
5,121,327 + PP_4507 0.67 +1.0
5,121,342 - PP_4507 0.68 +0.3
5,121,438 + PP_4507 0.74 +1.0
5,121,438 + PP_4507 0.74 -2.1
5,121,438 + PP_4507 0.74 -3.0
5,121,438 + PP_4507 0.74 -0.1
5,121,438 + PP_4507 0.74 -1.6
5,121,438 + PP_4507 0.74 +1.1
5,121,438 + PP_4507 0.74 +1.4
5,121,438 + PP_4507 0.74 +0.5
5,121,438 + PP_4507 0.74 -0.7
5,121,439 - PP_4507 0.74 -2.5
5,121,439 - PP_4507 0.74 -0.2
5,121,439 - PP_4507 0.74 +0.3
5,121,439 - PP_4507 0.74 -2.6
5,121,439 - PP_4507 0.74 +1.3
5,121,439 - PP_4507 0.74 -1.1
5,121,439 - PP_4507 0.74 -3.1
5,121,439 - PP_4507 0.74 +0.9
5,121,439 - PP_4507 0.74 +0.6
5,121,659 - PP_4507 0.89 -1.1
5,121,845 + +1.2
5,121,920 + PP_4508 0.15 -0.2
5,121,921 - PP_4508 0.15 +0.1
5,121,959 + PP_4508 0.19 -3.0
5,121,960 - PP_4508 0.19 -0.5
5,121,960 - PP_4508 0.19 -2.2
5,121,960 - PP_4508 0.19 +0.1
5,121,960 - PP_4508 0.19 -1.9
5,122,301 + PP_4508 0.54 -2.9
5,122,301 + PP_4508 0.54 -2.7
5,122,301 + PP_4508 0.54 +0.1
5,122,302 - PP_4508 0.54 +0.4
5,122,302 - PP_4508 0.54 -0.8
5,122,302 - PP_4508 0.54 +0.9
5,122,466 + PP_4508 0.71 +0.7
5,122,467 - PP_4508 0.71 -1.2
5,122,524 - PP_4508 0.77 +0.4
5,122,577 + PP_4508 0.82 -2.1
5,122,844 + -1.6
5,122,845 - -0.2
5,122,875 + -1.6
5,122,875 + -0.0
5,122,876 - +2.6
5,122,890 + -2.0
5,122,890 + -0.3
5,122,890 + +1.1
5,122,902 + +1.2
5,122,902 + -1.8
5,122,902 + +0.3
5,122,921 + -3.5
5,122,922 - +0.1
5,122,922 - -0.7
5,122,948 + -1.9
5,122,948 + -1.1
5,122,949 - -0.4
5,122,964 - +0.6
5,122,964 - +1.2
5,122,966 + +0.3
5,123,023 + PP_4509 0.12 +0.9
5,123,023 + PP_4509 0.12 -0.0
5,123,029 + PP_4509 0.14 +1.0
5,123,030 - PP_4509 0.15 +1.4
5,123,032 + PP_4509 0.15 +0.1
5,123,033 - PP_4509 0.16 -2.2
5,123,096 + PP_4509 0.36 +0.0
5,123,097 - PP_4509 0.36 -0.7
5,123,110 + PP_4509 0.40 +0.6
5,123,111 - PP_4509 0.41 -1.7
5,123,220 + PP_4509 0.76 -2.3
5,123,220 + PP_4509 0.76 -1.1
5,123,233 + PP_4509 0.80 +0.4
5,123,233 + PP_4509 0.80 -2.1
5,123,277 - -0.7
5,123,293 + +1.1
5,123,293 + +0.8
5,123,294 - -0.9
5,123,335 + -0.6
5,123,384 - +0.1
5,123,495 + PP_4510 0.20 +1.5
5,123,495 + PP_4510 0.20 +1.2
5,123,496 - PP_4510 0.20 -2.4
5,123,496 - PP_4510 0.20 +0.8
5,123,496 - PP_4510 0.20 -0.6
5,123,602 + PP_4510 0.34 +0.5
5,123,621 - PP_4510 0.36 +0.8
5,123,626 + PP_4510 0.37 +0.2
5,123,626 + PP_4510 0.37 -1.4
5,123,626 + PP_4510 0.37 +0.3
5,123,684 - PP_4510 0.44 +0.5
5,123,684 - PP_4510 0.44 +0.8

Or see this region's nucleotide sequence