Strain Fitness in Pseudomonas putida KT2440 around PP_4021

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4020 and PP_4021 are separated by 173 nucleotidesPP_4021 and PP_4022 are separated by 119 nucleotides PP_4020: PP_4020 - putative Oxidoreductase, at 4,532,269 to 4,533,558 _4020 PP_4021: PP_4021 - non-heme chloroperoxidase, at 4,533,732 to 4,534,562 _4021 PP_4022: PP_4022 - conserved protein of unknown function, at 4,534,682 to 4,535,473 _4022 Position (kb) 4533 4534 4535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4532.732 kb on - strand, within PP_4020at 4532.914 kb on + strand, within PP_4020at 4532.936 kb on - strand, within PP_4020at 4532.975 kb on + strand, within PP_4020at 4532.975 kb on + strand, within PP_4020at 4532.976 kb on - strand, within PP_4020at 4532.976 kb on - strand, within PP_4020at 4532.976 kb on - strand, within PP_4020at 4532.998 kb on + strand, within PP_4020at 4533.098 kb on + strand, within PP_4020at 4533.099 kb on - strand, within PP_4020at 4533.099 kb on - strand, within PP_4020at 4533.101 kb on + strand, within PP_4020at 4533.102 kb on - strand, within PP_4020at 4533.102 kb on - strand, within PP_4020at 4533.146 kb on - strand, within PP_4020at 4533.146 kb on - strand, within PP_4020at 4533.196 kb on + strand, within PP_4020at 4533.196 kb on + strand, within PP_4020at 4533.241 kb on + strand, within PP_4020at 4533.241 kb on + strand, within PP_4020at 4533.286 kb on + strand, within PP_4020at 4533.286 kb on + strand, within PP_4020at 4533.286 kb on + strand, within PP_4020at 4533.286 kb on + strand, within PP_4020at 4533.286 kb on + strand, within PP_4020at 4533.287 kb on - strand, within PP_4020at 4533.287 kb on - strand, within PP_4020at 4533.287 kb on - strand, within PP_4020at 4533.615 kb on + strandat 4533.616 kb on - strandat 4533.668 kb on - strandat 4533.668 kb on - strandat 4533.686 kb on + strandat 4533.686 kb on + strandat 4533.687 kb on - strandat 4533.695 kb on + strandat 4533.695 kb on + strandat 4533.695 kb on + strandat 4533.696 kb on - strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.738 kb on + strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.739 kb on - strandat 4533.742 kb on + strandat 4533.742 kb on + strandat 4533.743 kb on - strandat 4533.760 kb on + strandat 4533.771 kb on + strandat 4533.772 kb on - strandat 4533.928 kb on + strand, within PP_4021at 4533.929 kb on - strand, within PP_4021at 4533.954 kb on + strand, within PP_4021at 4533.967 kb on + strand, within PP_4021at 4534.048 kb on - strand, within PP_4021at 4534.048 kb on - strand, within PP_4021at 4534.048 kb on - strand, within PP_4021at 4534.117 kb on + strand, within PP_4021at 4534.117 kb on + strand, within PP_4021at 4534.117 kb on + strand, within PP_4021at 4534.230 kb on + strand, within PP_4021at 4534.230 kb on + strand, within PP_4021at 4534.231 kb on - strand, within PP_4021at 4534.231 kb on - strand, within PP_4021at 4534.236 kb on + strand, within PP_4021at 4534.320 kb on + strand, within PP_4021at 4534.320 kb on + strand, within PP_4021at 4534.320 kb on + strand, within PP_4021at 4534.320 kb on + strand, within PP_4021at 4534.320 kb on + strand, within PP_4021at 4534.321 kb on - strand, within PP_4021at 4534.321 kb on - strand, within PP_4021at 4534.321 kb on - strand, within PP_4021at 4534.321 kb on - strand, within PP_4021at 4534.441 kb on + strand, within PP_4021at 4534.441 kb on + strand, within PP_4021at 4534.442 kb on - strand, within PP_4021at 4534.482 kb on + strandat 4534.483 kb on - strandat 4534.483 kb on - strandat 4534.596 kb on + strandat 4534.596 kb on + strandat 4534.596 kb on + strandat 4534.596 kb on + strandat 4534.596 kb on + strandat 4534.653 kb on + strandat 4534.787 kb on - strand, within PP_4022at 4534.808 kb on + strand, within PP_4022at 4534.817 kb on + strand, within PP_4022at 4534.825 kb on + strand, within PP_4022at 4534.825 kb on + strand, within PP_4022at 4534.825 kb on + strand, within PP_4022at 4534.872 kb on - strand, within PP_4022at 4534.872 kb on - strand, within PP_4022at 4534.872 kb on - strand, within PP_4022at 4534.872 kb on - strand, within PP_4022at 4534.915 kb on + strand, within PP_4022at 4534.916 kb on - strand, within PP_4022at 4534.920 kb on - strand, within PP_4022at 4534.920 kb on - strand, within PP_4022at 4534.961 kb on - strand, within PP_4022at 4534.991 kb on + strand, within PP_4022at 4534.992 kb on - strand, within PP_4022at 4534.992 kb on - strand, within PP_4022at 4534.992 kb on - strand, within PP_4022at 4534.992 kb on - strand, within PP_4022at 4534.992 kb on - strand, within PP_4022at 4534.997 kb on + strand, within PP_4022at 4534.997 kb on + strand, within PP_4022at 4534.998 kb on - strand, within PP_4022at 4535.017 kb on + strand, within PP_4022at 4535.018 kb on - strand, within PP_4022at 4535.018 kb on - strand, within PP_4022at 4535.021 kb on + strand, within PP_4022at 4535.021 kb on + strand, within PP_4022at 4535.174 kb on - strand, within PP_4022at 4535.259 kb on + strand, within PP_4022at 4535.378 kb on + strand, within PP_4022at 4535.379 kb on - strand, within PP_4022at 4535.435 kb on - strandat 4535.523 kb on + strandat 4535.529 kb on - strandat 4535.536 kb on - strandat 4535.541 kb on + strandat 4535.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,532,732 - PP_4020 0.36 +1.3
4,532,914 + PP_4020 0.50 -0.6
4,532,936 - PP_4020 0.52 -0.4
4,532,975 + PP_4020 0.55 -2.3
4,532,975 + PP_4020 0.55 +1.4
4,532,976 - PP_4020 0.55 -0.3
4,532,976 - PP_4020 0.55 +1.4
4,532,976 - PP_4020 0.55 +0.5
4,532,998 + PP_4020 0.57 -0.9
4,533,098 + PP_4020 0.64 +0.7
4,533,099 - PP_4020 0.64 -0.7
4,533,099 - PP_4020 0.64 +0.7
4,533,101 + PP_4020 0.64 -0.3
4,533,102 - PP_4020 0.65 -1.7
4,533,102 - PP_4020 0.65 -2.5
4,533,146 - PP_4020 0.68 +0.1
4,533,146 - PP_4020 0.68 -2.3
4,533,196 + PP_4020 0.72 +0.7
4,533,196 + PP_4020 0.72 +0.3
4,533,241 + PP_4020 0.75 -0.9
4,533,241 + PP_4020 0.75 +1.8
4,533,286 + PP_4020 0.79 -0.5
4,533,286 + PP_4020 0.79 +0.3
4,533,286 + PP_4020 0.79 -2.0
4,533,286 + PP_4020 0.79 -0.1
4,533,286 + PP_4020 0.79 +1.3
4,533,287 - PP_4020 0.79 +0.2
4,533,287 - PP_4020 0.79 +0.4
4,533,287 - PP_4020 0.79 +0.3
4,533,615 + +1.7
4,533,616 - -1.6
4,533,668 - +0.3
4,533,668 - +0.6
4,533,686 + +1.8
4,533,686 + -1.9
4,533,687 - +0.5
4,533,695 + -0.0
4,533,695 + +2.1
4,533,695 + +1.3
4,533,696 - +1.3
4,533,738 + -0.3
4,533,738 + +0.6
4,533,738 + -3.7
4,533,738 + +0.2
4,533,738 + -0.6
4,533,738 + +0.4
4,533,738 + -0.1
4,533,738 + -1.1
4,533,738 + -1.5
4,533,738 + +0.0
4,533,738 + +0.9
4,533,738 + +0.2
4,533,738 + -0.7
4,533,739 - +0.5
4,533,739 - -0.6
4,533,739 - +1.4
4,533,739 - -2.7
4,533,739 - +0.8
4,533,739 - -1.9
4,533,739 - -2.2
4,533,742 + +0.6
4,533,742 + -0.5
4,533,743 - +0.9
4,533,760 + -3.0
4,533,771 + +0.8
4,533,772 - +0.7
4,533,928 + PP_4021 0.24 -3.0
4,533,929 - PP_4021 0.24 +1.0
4,533,954 + PP_4021 0.27 +0.4
4,533,967 + PP_4021 0.28 -2.9
4,534,048 - PP_4021 0.38 +0.5
4,534,048 - PP_4021 0.38 -0.6
4,534,048 - PP_4021 0.38 -1.9
4,534,117 + PP_4021 0.46 -1.6
4,534,117 + PP_4021 0.46 +0.1
4,534,117 + PP_4021 0.46 -0.1
4,534,230 + PP_4021 0.60 -1.4
4,534,230 + PP_4021 0.60 +0.6
4,534,231 - PP_4021 0.60 +1.0
4,534,231 - PP_4021 0.60 -1.0
4,534,236 + PP_4021 0.61 -0.4
4,534,320 + PP_4021 0.71 +0.5
4,534,320 + PP_4021 0.71 -0.2
4,534,320 + PP_4021 0.71 -3.1
4,534,320 + PP_4021 0.71 +1.0
4,534,320 + PP_4021 0.71 +0.3
4,534,321 - PP_4021 0.71 +0.1
4,534,321 - PP_4021 0.71 -1.7
4,534,321 - PP_4021 0.71 +1.6
4,534,321 - PP_4021 0.71 -0.5
4,534,441 + PP_4021 0.85 -2.5
4,534,441 + PP_4021 0.85 -1.5
4,534,442 - PP_4021 0.85 -1.2
4,534,482 + +0.1
4,534,483 - -0.3
4,534,483 - -2.2
4,534,596 + -2.7
4,534,596 + -0.5
4,534,596 + -0.5
4,534,596 + -0.2
4,534,596 + +0.7
4,534,653 + -0.3
4,534,787 - PP_4022 0.13 +0.0
4,534,808 + PP_4022 0.16 +1.4
4,534,817 + PP_4022 0.17 -3.4
4,534,825 + PP_4022 0.18 +0.4
4,534,825 + PP_4022 0.18 -0.1
4,534,825 + PP_4022 0.18 +2.3
4,534,872 - PP_4022 0.24 -0.1
4,534,872 - PP_4022 0.24 +0.9
4,534,872 - PP_4022 0.24 +1.1
4,534,872 - PP_4022 0.24 -2.7
4,534,915 + PP_4022 0.29 -0.4
4,534,916 - PP_4022 0.30 -0.4
4,534,920 - PP_4022 0.30 +0.5
4,534,920 - PP_4022 0.30 -0.9
4,534,961 - PP_4022 0.35 -0.1
4,534,991 + PP_4022 0.39 +0.4
4,534,992 - PP_4022 0.39 +2.2
4,534,992 - PP_4022 0.39 -1.3
4,534,992 - PP_4022 0.39 -2.1
4,534,992 - PP_4022 0.39 -0.8
4,534,992 - PP_4022 0.39 -1.2
4,534,997 + PP_4022 0.40 +1.1
4,534,997 + PP_4022 0.40 -1.2
4,534,998 - PP_4022 0.40 -1.9
4,535,017 + PP_4022 0.42 +0.9
4,535,018 - PP_4022 0.42 +0.1
4,535,018 - PP_4022 0.42 -3.8
4,535,021 + PP_4022 0.43 -1.7
4,535,021 + PP_4022 0.43 -2.4
4,535,174 - PP_4022 0.62 -0.4
4,535,259 + PP_4022 0.73 -2.8
4,535,378 + PP_4022 0.88 +0.1
4,535,379 - PP_4022 0.88 -1.4
4,535,435 - -1.2
4,535,523 + -0.5
4,535,529 - +0.4
4,535,536 - +0.7
4,535,541 + -2.5
4,535,542 - +0.3

Or see this region's nucleotide sequence