Strain Fitness in Pseudomonas putida KT2440 around PP_3709

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3708 and PP_3709 are separated by 115 nucleotidesPP_3709 and PP_5625 are separated by 83 nucleotidesPP_5625 and PP_3710 are separated by 217 nucleotides PP_3708: PP_3708 - conserved protein of unknown function, at 4,230,228 to 4,231,265 _3708 PP_3709: PP_3709 - conserved protein of unknown function, at 4,231,381 to 4,231,740 _3709 PP_5625: PP_5625 - conserved protein of unknown function, at 4,231,824 to 4,232,114 _5625 PP_3710: PP_3710 - conserved protein of unknown function, at 4,232,332 to 4,232,793 _3710 Position (kb) 4231 4232Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4230.383 kb on - strand, within PP_3708at 4230.383 kb on - strand, within PP_3708at 4230.415 kb on - strand, within PP_3708at 4230.445 kb on + strand, within PP_3708at 4230.446 kb on - strand, within PP_3708at 4230.446 kb on - strand, within PP_3708at 4230.446 kb on - strand, within PP_3708at 4230.477 kb on + strand, within PP_3708at 4230.477 kb on + strand, within PP_3708at 4230.478 kb on - strand, within PP_3708at 4230.478 kb on - strand, within PP_3708at 4230.478 kb on - strand, within PP_3708at 4230.500 kb on - strand, within PP_3708at 4230.510 kb on + strand, within PP_3708at 4230.521 kb on - strand, within PP_3708at 4230.585 kb on + strand, within PP_3708at 4230.630 kb on + strand, within PP_3708at 4230.631 kb on - strand, within PP_3708at 4230.837 kb on - strand, within PP_3708at 4230.837 kb on - strand, within PP_3708at 4230.856 kb on - strand, within PP_3708at 4230.929 kb on + strand, within PP_3708at 4230.929 kb on + strand, within PP_3708at 4230.929 kb on + strand, within PP_3708at 4230.930 kb on - strand, within PP_3708at 4230.933 kb on + strand, within PP_3708at 4230.933 kb on + strand, within PP_3708at 4230.938 kb on + strand, within PP_3708at 4230.969 kb on - strand, within PP_3708at 4231.038 kb on + strand, within PP_3708at 4231.038 kb on + strand, within PP_3708at 4231.118 kb on + strand, within PP_3708at 4231.123 kb on - strand, within PP_3708at 4231.123 kb on - strand, within PP_3708at 4231.201 kb on - strandat 4231.201 kb on - strandat 4231.230 kb on - strandat 4231.372 kb on + strandat 4231.372 kb on + strandat 4231.373 kb on - strandat 4231.373 kb on - strandat 4231.373 kb on - strandat 4231.382 kb on + strandat 4231.425 kb on + strand, within PP_3709at 4231.425 kb on + strand, within PP_3709at 4231.425 kb on + strand, within PP_3709at 4231.425 kb on + strand, within PP_3709at 4231.425 kb on + strand, within PP_3709at 4231.426 kb on - strand, within PP_3709at 4231.461 kb on - strand, within PP_3709at 4231.477 kb on - strand, within PP_3709at 4231.623 kb on + strand, within PP_3709at 4231.624 kb on - strand, within PP_3709at 4231.690 kb on + strand, within PP_3709at 4231.691 kb on - strand, within PP_3709at 4231.699 kb on + strand, within PP_3709at 4231.699 kb on + strand, within PP_3709at 4231.700 kb on - strand, within PP_3709at 4231.756 kb on - strandat 4231.856 kb on + strand, within PP_5625at 4231.856 kb on + strand, within PP_5625at 4231.938 kb on + strand, within PP_5625at 4231.971 kb on + strand, within PP_5625at 4231.972 kb on - strand, within PP_5625at 4231.972 kb on - strand, within PP_5625at 4232.116 kb on - strandat 4232.186 kb on + strandat 4232.207 kb on - strandat 4232.207 kb on - strandat 4232.241 kb on + strandat 4232.257 kb on - strandat 4232.270 kb on + strandat 4232.270 kb on + strandat 4232.270 kb on + strandat 4232.271 kb on - strandat 4232.271 kb on - strandat 4232.271 kb on - strandat 4232.271 kb on - strandat 4232.271 kb on - strandat 4232.279 kb on + strandat 4232.279 kb on + strandat 4232.279 kb on + strandat 4232.280 kb on - strandat 4232.280 kb on - strandat 4232.280 kb on - strandat 4232.281 kb on + strandat 4232.281 kb on + strandat 4232.281 kb on + strandat 4232.281 kb on + strandat 4232.282 kb on - strandat 4232.282 kb on - strandat 4232.282 kb on - strandat 4232.282 kb on - strandat 4232.317 kb on + strandat 4232.318 kb on - strandat 4232.423 kb on + strand, within PP_3710at 4232.423 kb on + strand, within PP_3710at 4232.423 kb on + strand, within PP_3710at 4232.424 kb on - strand, within PP_3710at 4232.424 kb on - strand, within PP_3710at 4232.424 kb on - strand, within PP_3710at 4232.443 kb on - strand, within PP_3710at 4232.443 kb on - strand, within PP_3710at 4232.497 kb on + strand, within PP_3710at 4232.498 kb on - strand, within PP_3710at 4232.498 kb on - strand, within PP_3710at 4232.498 kb on - strand, within PP_3710at 4232.524 kb on - strand, within PP_3710at 4232.545 kb on + strand, within PP_3710at 4232.631 kb on + strand, within PP_3710at 4232.632 kb on - strand, within PP_3710at 4232.668 kb on - strand, within PP_3710at 4232.683 kb on + strand, within PP_3710at 4232.684 kb on - strand, within PP_3710at 4232.684 kb on - strand, within PP_3710at 4232.684 kb on - strand, within PP_3710at 4232.713 kb on + strand, within PP_3710at 4232.713 kb on + strand, within PP_3710at 4232.713 kb on + strand, within PP_3710at 4232.714 kb on - strand, within PP_3710at 4232.714 kb on - strand, within PP_3710at 4232.714 kb on - strand, within PP_3710at 4232.721 kb on + strand, within PP_3710at 4232.721 kb on + strand, within PP_3710at 4232.721 kb on + strand, within PP_3710at 4232.722 kb on - strand, within PP_3710

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,230,383 - PP_3708 0.15 +1.0
4,230,383 - PP_3708 0.15 -0.4
4,230,415 - PP_3708 0.18 +0.4
4,230,445 + PP_3708 0.21 -0.2
4,230,446 - PP_3708 0.21 -1.6
4,230,446 - PP_3708 0.21 +2.3
4,230,446 - PP_3708 0.21 +1.7
4,230,477 + PP_3708 0.24 -1.7
4,230,477 + PP_3708 0.24 +0.3
4,230,478 - PP_3708 0.24 -2.1
4,230,478 - PP_3708 0.24 +1.6
4,230,478 - PP_3708 0.24 -1.2
4,230,500 - PP_3708 0.26 -1.4
4,230,510 + PP_3708 0.27 +0.2
4,230,521 - PP_3708 0.28 -0.0
4,230,585 + PP_3708 0.34 +1.7
4,230,630 + PP_3708 0.39 -3.8
4,230,631 - PP_3708 0.39 -0.3
4,230,837 - PP_3708 0.59 +1.2
4,230,837 - PP_3708 0.59 +0.4
4,230,856 - PP_3708 0.61 -3.6
4,230,929 + PP_3708 0.68 +1.1
4,230,929 + PP_3708 0.68 +0.2
4,230,929 + PP_3708 0.68 +0.6
4,230,930 - PP_3708 0.68 -1.5
4,230,933 + PP_3708 0.68 -0.2
4,230,933 + PP_3708 0.68 +0.7
4,230,938 + PP_3708 0.68 -0.6
4,230,969 - PP_3708 0.71 -1.5
4,231,038 + PP_3708 0.78 -0.2
4,231,038 + PP_3708 0.78 -2.6
4,231,118 + PP_3708 0.86 +2.0
4,231,123 - PP_3708 0.86 +0.5
4,231,123 - PP_3708 0.86 +1.0
4,231,201 - -2.8
4,231,201 - -0.5
4,231,230 - -0.0
4,231,372 + +0.9
4,231,372 + -3.0
4,231,373 - -0.9
4,231,373 - +1.1
4,231,373 - +0.1
4,231,382 + +0.2
4,231,425 + PP_3709 0.12 +0.3
4,231,425 + PP_3709 0.12 +0.6
4,231,425 + PP_3709 0.12 -3.2
4,231,425 + PP_3709 0.12 -3.5
4,231,425 + PP_3709 0.12 +0.1
4,231,426 - PP_3709 0.12 -3.6
4,231,461 - PP_3709 0.22 +0.2
4,231,477 - PP_3709 0.27 -2.6
4,231,623 + PP_3709 0.67 -0.2
4,231,624 - PP_3709 0.68 -0.8
4,231,690 + PP_3709 0.86 -0.7
4,231,691 - PP_3709 0.86 -1.2
4,231,699 + PP_3709 0.88 -1.2
4,231,699 + PP_3709 0.88 +0.3
4,231,700 - PP_3709 0.89 +1.6
4,231,756 - +1.3
4,231,856 + PP_5625 0.11 -1.6
4,231,856 + PP_5625 0.11 +0.5
4,231,938 + PP_5625 0.39 +1.1
4,231,971 + PP_5625 0.51 +1.9
4,231,972 - PP_5625 0.51 +0.1
4,231,972 - PP_5625 0.51 +2.2
4,232,116 - +1.7
4,232,186 + +0.4
4,232,207 - -0.8
4,232,207 - -2.0
4,232,241 + +1.6
4,232,257 - -3.5
4,232,270 + +1.0
4,232,270 + -2.9
4,232,270 + +1.6
4,232,271 - +0.6
4,232,271 - +1.4
4,232,271 - +0.5
4,232,271 - -0.1
4,232,271 - -2.3
4,232,279 + +0.3
4,232,279 + +1.0
4,232,279 + +0.2
4,232,280 - +0.1
4,232,280 - +1.0
4,232,280 - +0.6
4,232,281 + -1.6
4,232,281 + -2.4
4,232,281 + -0.5
4,232,281 + +0.8
4,232,282 - +2.3
4,232,282 - -0.2
4,232,282 - -0.7
4,232,282 - -3.5
4,232,317 + +1.3
4,232,318 - +0.7
4,232,423 + PP_3710 0.20 -0.7
4,232,423 + PP_3710 0.20 -1.8
4,232,423 + PP_3710 0.20 +0.3
4,232,424 - PP_3710 0.20 -0.3
4,232,424 - PP_3710 0.20 -1.3
4,232,424 - PP_3710 0.20 -0.6
4,232,443 - PP_3710 0.24 -3.6
4,232,443 - PP_3710 0.24 +0.4
4,232,497 + PP_3710 0.36 +0.3
4,232,498 - PP_3710 0.36 -0.9
4,232,498 - PP_3710 0.36 +1.0
4,232,498 - PP_3710 0.36 -0.3
4,232,524 - PP_3710 0.42 -0.5
4,232,545 + PP_3710 0.46 +0.4
4,232,631 + PP_3710 0.65 +0.5
4,232,632 - PP_3710 0.65 -2.4
4,232,668 - PP_3710 0.73 -1.0
4,232,683 + PP_3710 0.76 -1.5
4,232,684 - PP_3710 0.76 +0.0
4,232,684 - PP_3710 0.76 -1.2
4,232,684 - PP_3710 0.76 +0.9
4,232,713 + PP_3710 0.82 +0.6
4,232,713 + PP_3710 0.82 +0.5
4,232,713 + PP_3710 0.82 -2.0
4,232,714 - PP_3710 0.83 -0.4
4,232,714 - PP_3710 0.83 -0.3
4,232,714 - PP_3710 0.83 +0.3
4,232,721 + PP_3710 0.84 -0.1
4,232,721 + PP_3710 0.84 -1.4
4,232,721 + PP_3710 0.84 -0.7
4,232,722 - PP_3710 0.84 -0.6

Or see this region's nucleotide sequence