Strain Fitness in Pseudomonas putida KT2440 around PP_3696

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3695 and PP_3696 are separated by 6 nucleotidesPP_3696 and PP_3697 are separated by 6 nucleotides PP_3695: PP_3695 - conserved protein of unknown function, at 4,212,573 to 4,213,724 _3695 PP_3696: PP_3696 - conserved protein of unknown function, at 4,213,731 to 4,214,951 _3696 PP_3697: PP_3697 - conserved protein of unknown function, at 4,214,958 to 4,217,042 _3697 Position (kb) 4213 4214 4215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4212.776 kb on + strand, within PP_3695at 4212.785 kb on + strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.795 kb on + strand, within PP_3695at 4212.840 kb on - strand, within PP_3695at 4212.849 kb on - strand, within PP_3695at 4212.865 kb on + strand, within PP_3695at 4212.927 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.052 kb on + strand, within PP_3695at 4213.103 kb on + strand, within PP_3695at 4213.104 kb on - strand, within PP_3695at 4213.104 kb on - strand, within PP_3695at 4213.111 kb on + strand, within PP_3695at 4213.159 kb on + strand, within PP_3695at 4213.215 kb on - strand, within PP_3695at 4213.215 kb on - strand, within PP_3695at 4213.218 kb on + strand, within PP_3695at 4213.219 kb on - strand, within PP_3695at 4213.219 kb on - strand, within PP_3695at 4213.272 kb on + strand, within PP_3695at 4213.272 kb on + strand, within PP_3695at 4213.285 kb on - strand, within PP_3695at 4213.319 kb on + strandat 4213.319 kb on + strandat 4213.319 kb on + strand, within PP_3695at 4213.320 kb on - strand, within PP_3695at 4213.402 kb on + strand, within PP_3695at 4213.402 kb on + strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.413 kb on + strand, within PP_3695at 4213.413 kb on + strand, within PP_3695at 4213.414 kb on - strand, within PP_3695at 4213.414 kb on - strand, within PP_3695at 4213.424 kb on + strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.437 kb on - strand, within PP_3695at 4213.476 kb on + strand, within PP_3695at 4213.485 kb on + strand, within PP_3695at 4213.604 kb on + strand, within PP_3695at 4213.611 kb on - strandat 4213.684 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.704 kb on + strandat 4213.704 kb on + strandat 4213.725 kb on - strandat 4213.795 kb on + strandat 4213.824 kb on + strandat 4213.825 kb on - strandat 4213.825 kb on - strandat 4213.910 kb on + strand, within PP_3696at 4214.007 kb on - strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.067 kb on - strand, within PP_3696at 4214.074 kb on + strand, within PP_3696at 4214.074 kb on + strand, within PP_3696at 4214.075 kb on - strand, within PP_3696at 4214.075 kb on - strand, within PP_3696at 4214.083 kb on - strandat 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.197 kb on - strand, within PP_3696at 4214.197 kb on - strand, within PP_3696at 4214.216 kb on + strand, within PP_3696at 4214.217 kb on - strand, within PP_3696at 4214.217 kb on - strand, within PP_3696at 4214.231 kb on + strand, within PP_3696at 4214.276 kb on - strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.374 kb on - strand, within PP_3696at 4214.386 kb on + strand, within PP_3696at 4214.386 kb on + strand, within PP_3696at 4214.387 kb on - strand, within PP_3696at 4214.387 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.474 kb on - strand, within PP_3696at 4214.518 kb on + strand, within PP_3696at 4214.582 kb on + strand, within PP_3696at 4214.582 kb on + strand, within PP_3696at 4214.583 kb on - strand, within PP_3696at 4214.583 kb on - strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.585 kb on - strand, within PP_3696at 4214.585 kb on - strand, within PP_3696at 4214.708 kb on + strand, within PP_3696at 4214.708 kb on + strand, within PP_3696at 4214.731 kb on + strand, within PP_3696at 4214.732 kb on - strand, within PP_3696at 4214.853 kb on + strandat 4214.854 kb on - strandat 4214.959 kb on + strandat 4214.959 kb on + strandat 4214.960 kb on - strandat 4215.007 kb on + strandat 4215.030 kb on + strandat 4215.030 kb on + strandat 4215.030 kb on + strandat 4215.030 kb on + strandat 4215.031 kb on - strandat 4215.031 kb on - strandat 4215.094 kb on + strandat 4215.095 kb on - strandat 4215.119 kb on + strandat 4215.119 kb on + strandat 4215.119 kb on + strandat 4215.119 kb on + strandat 4215.120 kb on - strandat 4215.120 kb on - strandat 4215.153 kb on + strandat 4215.153 kb on + strandat 4215.154 kb on - strandat 4215.203 kb on - strand, within PP_3697at 4215.203 kb on - strand, within PP_3697at 4215.221 kb on + strand, within PP_3697at 4215.248 kb on + strand, within PP_3697at 4215.248 kb on + strand, within PP_3697at 4215.248 kb on + strand, within PP_3697at 4215.248 kb on + strand, within PP_3697at 4215.249 kb on - strand, within PP_3697at 4215.249 kb on - strand, within PP_3697at 4215.249 kb on - strand, within PP_3697at 4215.288 kb on - strand, within PP_3697at 4215.462 kb on + strand, within PP_3697at 4215.462 kb on + strandat 4215.462 kb on + strand, within PP_3697at 4215.463 kb on - strand, within PP_3697at 4215.463 kb on - strand, within PP_3697at 4215.579 kb on + strand, within PP_3697at 4215.580 kb on - strand, within PP_3697at 4215.580 kb on - strand, within PP_3697at 4215.581 kb on + strand, within PP_3697at 4215.581 kb on + strand, within PP_3697at 4215.581 kb on + strand, within PP_3697at 4215.581 kb on + strand, within PP_3697at 4215.581 kb on + strand, within PP_3697at 4215.582 kb on - strand, within PP_3697at 4215.582 kb on - strand, within PP_3697at 4215.706 kb on + strand, within PP_3697at 4215.743 kb on + strand, within PP_3697at 4215.744 kb on - strand, within PP_3697at 4215.744 kb on - strand, within PP_3697at 4215.785 kb on + strand, within PP_3697at 4215.785 kb on + strand, within PP_3697at 4215.786 kb on - strand, within PP_3697at 4215.786 kb on - strand, within PP_3697at 4215.846 kb on + strand, within PP_3697at 4215.846 kb on + strand, within PP_3697at 4215.846 kb on + strand, within PP_3697at 4215.943 kb on + strand, within PP_3697at 4215.944 kb on - strand, within PP_3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,212,776 + PP_3695 0.18 +0.2
4,212,785 + PP_3695 0.18 -0.0
4,212,786 - PP_3695 0.18 +0.1
4,212,786 - PP_3695 0.18 -1.3
4,212,786 - PP_3695 0.18 +0.8
4,212,786 - PP_3695 0.18 +0.1
4,212,795 + PP_3695 0.19 -1.3
4,212,840 - PP_3695 0.23 -1.5
4,212,849 - PP_3695 0.24 -1.3
4,212,865 + PP_3695 0.25 -0.5
4,212,927 + PP_3695 0.31 -2.4
4,213,008 + PP_3695 0.38 +1.4
4,213,008 + PP_3695 0.38 +0.1
4,213,008 + PP_3695 0.38 -0.7
4,213,009 - PP_3695 0.38 -0.0
4,213,009 - PP_3695 0.38 +1.5
4,213,009 - PP_3695 0.38 +0.7
4,213,009 - PP_3695 0.38 -0.2
4,213,009 - PP_3695 0.38 -0.3
4,213,052 + PP_3695 0.42 +0.6
4,213,103 + PP_3695 0.46 +0.7
4,213,104 - PP_3695 0.46 -0.1
4,213,104 - PP_3695 0.46 +0.4
4,213,111 + PP_3695 0.47 +0.4
4,213,159 + PP_3695 0.51 -3.5
4,213,215 - PP_3695 0.56 -0.6
4,213,215 - PP_3695 0.56 -0.1
4,213,218 + PP_3695 0.56 +0.6
4,213,219 - PP_3695 0.56 +1.0
4,213,219 - PP_3695 0.56 +0.4
4,213,272 + PP_3695 0.61 -2.1
4,213,272 + PP_3695 0.61 +0.5
4,213,285 - PP_3695 0.62 +0.6
4,213,319 + +1.7
4,213,319 + +0.5
4,213,319 + PP_3695 0.65 -2.9
4,213,320 - PP_3695 0.65 -1.1
4,213,402 + PP_3695 0.72 +1.0
4,213,402 + PP_3695 0.72 +0.2
4,213,403 - PP_3695 0.72 +1.9
4,213,403 - PP_3695 0.72 -0.2
4,213,403 - PP_3695 0.72 +1.6
4,213,403 - PP_3695 0.72 -2.1
4,213,403 - PP_3695 0.72 +1.5
4,213,413 + PP_3695 0.73 +1.3
4,213,413 + PP_3695 0.73 -1.2
4,213,414 - PP_3695 0.73 +0.4
4,213,414 - PP_3695 0.73 +0.4
4,213,424 + PP_3695 0.74 +1.3
4,213,425 - PP_3695 0.74 +1.1
4,213,425 - PP_3695 0.74 +1.4
4,213,425 - PP_3695 0.74 +2.1
4,213,425 - PP_3695 0.74 +0.4
4,213,425 - PP_3695 0.74 -0.8
4,213,425 - PP_3695 0.74 +1.0
4,213,437 - PP_3695 0.75 -3.0
4,213,476 + PP_3695 0.78 +0.4
4,213,485 + PP_3695 0.79 +1.8
4,213,604 + PP_3695 0.89 +0.7
4,213,611 - +0.4
4,213,684 + -0.5
4,213,697 + -1.0
4,213,697 + -0.5
4,213,697 + -1.9
4,213,697 + -0.1
4,213,697 + -0.8
4,213,704 + -3.3
4,213,704 + +1.3
4,213,725 - -0.1
4,213,795 + +3.7
4,213,824 + -0.7
4,213,825 - -2.9
4,213,825 - -0.8
4,213,910 + PP_3696 0.15 +1.0
4,214,007 - PP_3696 0.23 -1.2
4,214,066 + PP_3696 0.27 +0.2
4,214,066 + PP_3696 0.27 +1.0
4,214,066 + PP_3696 0.27 +1.1
4,214,067 - PP_3696 0.28 +1.5
4,214,074 + PP_3696 0.28 -0.3
4,214,074 + PP_3696 0.28 -2.0
4,214,075 - PP_3696 0.28 -1.2
4,214,075 - PP_3696 0.28 +0.2
4,214,083 - -0.5
4,214,196 + PP_3696 0.38 -0.3
4,214,196 + PP_3696 0.38 -2.4
4,214,196 + PP_3696 0.38 -0.9
4,214,196 + PP_3696 0.38 -0.5
4,214,197 - PP_3696 0.38 -0.5
4,214,197 - PP_3696 0.38 -1.5
4,214,216 + PP_3696 0.40 -1.0
4,214,217 - PP_3696 0.40 +0.5
4,214,217 - PP_3696 0.40 +0.2
4,214,231 + PP_3696 0.41 +0.3
4,214,276 - PP_3696 0.45 -3.9
4,214,315 + PP_3696 0.48 -2.5
4,214,315 + PP_3696 0.48 +1.0
4,214,315 + PP_3696 0.48 -0.4
4,214,315 + PP_3696 0.48 -3.2
4,214,315 + PP_3696 0.48 -1.3
4,214,315 + PP_3696 0.48 -0.7
4,214,315 + PP_3696 0.48 -0.2
4,214,316 - PP_3696 0.48 -0.8
4,214,316 - PP_3696 0.48 -1.2
4,214,316 - PP_3696 0.48 +0.1
4,214,316 - PP_3696 0.48 +0.2
4,214,374 - PP_3696 0.53 -0.2
4,214,386 + PP_3696 0.54 -2.3
4,214,386 + PP_3696 0.54 -0.8
4,214,387 - PP_3696 0.54 -3.4
4,214,387 - PP_3696 0.54 +1.0
4,214,458 - PP_3696 0.60 -1.0
4,214,458 - PP_3696 0.60 -0.0
4,214,458 - PP_3696 0.60 -0.5
4,214,473 + PP_3696 0.61 -4.2
4,214,473 + PP_3696 0.61 -0.8
4,214,473 + PP_3696 0.61 +1.0
4,214,474 - PP_3696 0.61 -0.7
4,214,518 + PP_3696 0.64 +0.6
4,214,582 + PP_3696 0.70 +1.7
4,214,582 + PP_3696 0.70 -1.2
4,214,583 - PP_3696 0.70 -0.2
4,214,583 - PP_3696 0.70 -1.2
4,214,584 + PP_3696 0.70 +0.7
4,214,584 + PP_3696 0.70 -2.8
4,214,584 + PP_3696 0.70 +0.5
4,214,584 + PP_3696 0.70 -1.5
4,214,585 - PP_3696 0.70 +0.7
4,214,585 - PP_3696 0.70 +0.4
4,214,708 + PP_3696 0.80 +0.6
4,214,708 + PP_3696 0.80 -0.4
4,214,731 + PP_3696 0.82 +0.2
4,214,732 - PP_3696 0.82 -1.4
4,214,853 + +0.4
4,214,854 - -1.6
4,214,959 + +0.1
4,214,959 + +1.3
4,214,960 - +1.6
4,215,007 + +0.4
4,215,030 + -1.4
4,215,030 + -2.9
4,215,030 + -1.2
4,215,030 + -2.0
4,215,031 - +0.7
4,215,031 - +1.0
4,215,094 + -0.1
4,215,095 - +0.3
4,215,119 + -2.7
4,215,119 + -0.3
4,215,119 + +0.3
4,215,119 + +1.1
4,215,120 - +1.1
4,215,120 - -3.9
4,215,153 + +0.9
4,215,153 + +1.0
4,215,154 - +0.9
4,215,203 - PP_3697 0.12 +1.3
4,215,203 - PP_3697 0.12 +0.4
4,215,221 + PP_3697 0.13 -0.4
4,215,248 + PP_3697 0.14 +1.2
4,215,248 + PP_3697 0.14 +2.0
4,215,248 + PP_3697 0.14 +1.5
4,215,248 + PP_3697 0.14 -2.1
4,215,249 - PP_3697 0.14 -0.5
4,215,249 - PP_3697 0.14 -3.2
4,215,249 - PP_3697 0.14 -0.5
4,215,288 - PP_3697 0.16 +0.3
4,215,462 + PP_3697 0.24 +2.2
4,215,462 + -1.1
4,215,462 + PP_3697 0.24 -0.2
4,215,463 - PP_3697 0.24 -0.2
4,215,463 - PP_3697 0.24 +0.2
4,215,579 + PP_3697 0.30 -3.6
4,215,580 - PP_3697 0.30 -2.7
4,215,580 - PP_3697 0.30 +0.2
4,215,581 + PP_3697 0.30 -0.3
4,215,581 + PP_3697 0.30 -2.4
4,215,581 + PP_3697 0.30 -1.0
4,215,581 + PP_3697 0.30 -0.6
4,215,581 + PP_3697 0.30 +2.3
4,215,582 - PP_3697 0.30 -0.7
4,215,582 - PP_3697 0.30 +0.1
4,215,706 + PP_3697 0.36 -0.1
4,215,743 + PP_3697 0.38 +0.2
4,215,744 - PP_3697 0.38 -0.2
4,215,744 - PP_3697 0.38 +0.9
4,215,785 + PP_3697 0.40 +0.8
4,215,785 + PP_3697 0.40 +0.0
4,215,786 - PP_3697 0.40 -1.2
4,215,786 - PP_3697 0.40 +0.1
4,215,846 + PP_3697 0.43 -2.5
4,215,846 + PP_3697 0.43 -0.7
4,215,846 + PP_3697 0.43 +0.7
4,215,943 + PP_3697 0.47 +1.5
4,215,944 - PP_3697 0.47 -0.8

Or see this region's nucleotide sequence