Strain Fitness in Pseudomonas putida KT2440 around PP_3573

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3571 and PP_3572 overlap by 23 nucleotidesPP_3572 and PP_3573 are separated by 317 nucleotidesPP_3573 and PP_3574 are separated by 23 nucleotidesPP_3574 and PP_3575 are separated by 93 nucleotides PP_3571: PP_3571 - putative Acetylornithine deacetylase, at 4,051,279 to 4,052,454 _3571 PP_3572: PP_3572 - conserved protein of unknown function, at 4,052,432 to 4,053,109 _3572 PP_3573: PP_3573 - putative Monooxygenase, at 4,053,427 to 4,054,746 _3573 PP_3574: PP_3574 - conserved protein of unknown function, at 4,054,770 to 4,055,162 _3574 PP_3575: PP_3575 - Outer membrane ferric siderophore receptor, at 4,055,256 to 4,057,661 _3575 Position (kb) 4053 4054 4055Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4052.455 kb on - strandat 4052.493 kb on + strandat 4052.493 kb on + strandat 4052.493 kb on + strandat 4053.136 kb on + strandat 4053.136 kb on + strandat 4053.208 kb on + strandat 4053.215 kb on + strandat 4053.317 kb on + strandat 4053.317 kb on + strandat 4053.324 kb on + strandat 4053.325 kb on - strandat 4053.329 kb on - strandat 4053.331 kb on + strandat 4053.357 kb on + strandat 4053.530 kb on + strandat 4053.531 kb on - strandat 4053.679 kb on + strand, within PP_3573at 4053.691 kb on + strand, within PP_3573at 4053.691 kb on + strand, within PP_3573at 4053.692 kb on - strand, within PP_3573at 4053.692 kb on - strand, within PP_3573at 4053.695 kb on + strand, within PP_3573at 4053.695 kb on + strand, within PP_3573at 4053.695 kb on + strand, within PP_3573at 4053.696 kb on - strand, within PP_3573at 4053.696 kb on - strand, within PP_3573at 4053.696 kb on - strand, within PP_3573at 4053.703 kb on + strand, within PP_3573at 4053.703 kb on + strand, within PP_3573at 4053.704 kb on - strand, within PP_3573at 4053.902 kb on - strand, within PP_3573at 4054.006 kb on + strand, within PP_3573at 4054.006 kb on + strand, within PP_3573at 4054.007 kb on - strand, within PP_3573at 4054.288 kb on + strand, within PP_3573at 4054.288 kb on + strand, within PP_3573at 4054.288 kb on + strand, within PP_3573at 4054.289 kb on - strand, within PP_3573at 4054.289 kb on - strand, within PP_3573at 4054.318 kb on + strand, within PP_3573at 4054.319 kb on - strand, within PP_3573at 4054.445 kb on + strand, within PP_3573at 4054.445 kb on + strand, within PP_3573at 4054.445 kb on + strand, within PP_3573at 4054.446 kb on - strand, within PP_3573at 4054.446 kb on - strand, within PP_3573at 4054.446 kb on - strand, within PP_3573at 4054.487 kb on + strand, within PP_3573at 4054.488 kb on - strand, within PP_3573at 4054.552 kb on + strand, within PP_3573at 4054.552 kb on + strand, within PP_3573at 4054.751 kb on + strandat 4054.757 kb on + strandat 4054.758 kb on - strandat 4054.758 kb on - strandat 4054.851 kb on + strand, within PP_3574at 4054.851 kb on + strand, within PP_3574at 4054.851 kb on + strand, within PP_3574at 4054.851 kb on + strand, within PP_3574at 4054.851 kb on + strand, within PP_3574at 4054.852 kb on - strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.001 kb on + strand, within PP_3574at 4055.002 kb on - strand, within PP_3574at 4055.257 kb on + strandat 4055.257 kb on + strandat 4055.285 kb on - strandat 4055.285 kb on - strandat 4055.285 kb on - strandat 4055.289 kb on - strandat 4055.351 kb on - strandat 4055.438 kb on - strandat 4055.483 kb on - strandat 4055.603 kb on - strand, within PP_3575at 4055.640 kb on - strand, within PP_3575at 4055.640 kb on - strand, within PP_3575at 4055.641 kb on + strand, within PP_3575at 4055.641 kb on + strand, within PP_3575at 4055.641 kb on + strand, within PP_3575at 4055.641 kb on + strand, within PP_3575at 4055.642 kb on - strand, within PP_3575at 4055.642 kb on - strand, within PP_3575at 4055.642 kb on - strand, within PP_3575at 4055.642 kb on - strand, within PP_3575at 4055.642 kb on - strand, within PP_3575

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,052,455 - +0.4
4,052,493 + +0.3
4,052,493 + +0.1
4,052,493 + +0.8
4,053,136 + +1.0
4,053,136 + -0.2
4,053,208 + -0.4
4,053,215 + +0.4
4,053,317 + +1.1
4,053,317 + -0.6
4,053,324 + -0.9
4,053,325 - -1.2
4,053,329 - -2.4
4,053,331 + +1.2
4,053,357 + -0.4
4,053,530 + +0.2
4,053,531 - -1.4
4,053,679 + PP_3573 0.19 -0.4
4,053,691 + PP_3573 0.20 -0.8
4,053,691 + PP_3573 0.20 +0.5
4,053,692 - PP_3573 0.20 -2.2
4,053,692 - PP_3573 0.20 +1.3
4,053,695 + PP_3573 0.20 -2.2
4,053,695 + PP_3573 0.20 -1.7
4,053,695 + PP_3573 0.20 +0.4
4,053,696 - PP_3573 0.20 -1.8
4,053,696 - PP_3573 0.20 +0.3
4,053,696 - PP_3573 0.20 -1.8
4,053,703 + PP_3573 0.21 +0.3
4,053,703 + PP_3573 0.21 -0.3
4,053,704 - PP_3573 0.21 -0.7
4,053,902 - PP_3573 0.36 -3.2
4,054,006 + PP_3573 0.44 +0.9
4,054,006 + PP_3573 0.44 -3.1
4,054,007 - PP_3573 0.44 -1.1
4,054,288 + PP_3573 0.65 -0.2
4,054,288 + PP_3573 0.65 -0.4
4,054,288 + PP_3573 0.65 -2.2
4,054,289 - PP_3573 0.65 -0.1
4,054,289 - PP_3573 0.65 -1.5
4,054,318 + PP_3573 0.68 -0.6
4,054,319 - PP_3573 0.68 +1.4
4,054,445 + PP_3573 0.77 -3.3
4,054,445 + PP_3573 0.77 -1.8
4,054,445 + PP_3573 0.77 +0.3
4,054,446 - PP_3573 0.77 -1.8
4,054,446 - PP_3573 0.77 -3.6
4,054,446 - PP_3573 0.77 -2.2
4,054,487 + PP_3573 0.80 -2.1
4,054,488 - PP_3573 0.80 -3.1
4,054,552 + PP_3573 0.85 +0.5
4,054,552 + PP_3573 0.85 -0.7
4,054,751 + +0.3
4,054,757 + -1.3
4,054,758 - +0.4
4,054,758 - -0.1
4,054,851 + PP_3574 0.21 +0.7
4,054,851 + PP_3574 0.21 +0.2
4,054,851 + PP_3574 0.21 +1.1
4,054,851 + PP_3574 0.21 +0.3
4,054,851 + PP_3574 0.21 +2.0
4,054,852 - PP_3574 0.21 +1.8
4,055,001 + PP_3574 0.59 -2.0
4,055,001 + PP_3574 0.59 +0.8
4,055,001 + PP_3574 0.59 +0.9
4,055,001 + PP_3574 0.59 +0.4
4,055,001 + PP_3574 0.59 +0.9
4,055,001 + PP_3574 0.59 +0.5
4,055,002 - PP_3574 0.59 +0.8
4,055,257 + -2.2
4,055,257 + +0.8
4,055,285 - +0.3
4,055,285 - -1.4
4,055,285 - -2.2
4,055,289 - -0.6
4,055,351 - -0.4
4,055,438 - -0.5
4,055,483 - +0.3
4,055,603 - PP_3575 0.14 +0.1
4,055,640 - PP_3575 0.16 -0.0
4,055,640 - PP_3575 0.16 -3.0
4,055,641 + PP_3575 0.16 +0.5
4,055,641 + PP_3575 0.16 +0.1
4,055,641 + PP_3575 0.16 -0.7
4,055,641 + PP_3575 0.16 -0.7
4,055,642 - PP_3575 0.16 +0.8
4,055,642 - PP_3575 0.16 +0.8
4,055,642 - PP_3575 0.16 -3.3
4,055,642 - PP_3575 0.16 -0.8
4,055,642 - PP_3575 0.16 +0.2

Or see this region's nucleotide sequence