Strain Fitness in Pseudomonas putida KT2440 around PP_3556

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3555 and PP_3556 are separated by 13 nucleotidesPP_3556 and PP_3557 are separated by 246 nucleotides PP_3555: PP_3555 - putative Transmembrane sensor, at 4,032,363 to 4,033,370 _3555 PP_3556: PP_3556 - conserved membrane protein of unknown function, at 4,033,384 to 4,034,703 _3556 PP_3557: PP_3557 - Methyl-accepting chemotaxis transducer, at 4,034,950 to 4,037,094 _3557 Position (kb) 4033 4034 4035Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4032.714 kb on + strand, within PP_3555at 4032.715 kb on - strand, within PP_3555at 4032.715 kb on - strand, within PP_3555at 4032.775 kb on + strand, within PP_3555at 4032.775 kb on + strand, within PP_3555at 4032.813 kb on + strand, within PP_3555at 4032.813 kb on + strand, within PP_3555at 4032.814 kb on - strand, within PP_3555at 4032.951 kb on + strand, within PP_3555at 4033.098 kb on + strand, within PP_3555at 4033.098 kb on + strand, within PP_3555at 4033.099 kb on - strand, within PP_3555at 4033.099 kb on - strand, within PP_3555at 4033.099 kb on - strand, within PP_3555at 4033.245 kb on + strand, within PP_3555at 4033.246 kb on - strand, within PP_3555at 4033.246 kb on - strand, within PP_3555at 4033.246 kb on - strand, within PP_3555at 4033.303 kb on - strandat 4033.385 kb on + strandat 4033.385 kb on + strandat 4033.386 kb on - strandat 4033.386 kb on - strandat 4033.386 kb on - strandat 4033.434 kb on - strandat 4033.434 kb on - strandat 4033.434 kb on - strandat 4033.560 kb on + strand, within PP_3556at 4033.578 kb on + strand, within PP_3556at 4033.579 kb on - strand, within PP_3556at 4034.003 kb on + strand, within PP_3556at 4034.003 kb on + strand, within PP_3556at 4034.004 kb on - strand, within PP_3556at 4034.048 kb on + strand, within PP_3556at 4034.048 kb on + strand, within PP_3556at 4034.049 kb on - strand, within PP_3556at 4034.049 kb on - strand, within PP_3556at 4034.231 kb on + strandat 4034.231 kb on + strand, within PP_3556at 4034.231 kb on + strand, within PP_3556at 4034.232 kb on - strand, within PP_3556at 4034.232 kb on - strand, within PP_3556at 4034.283 kb on + strand, within PP_3556at 4034.304 kb on - strand, within PP_3556at 4034.317 kb on + strand, within PP_3556at 4034.318 kb on - strand, within PP_3556at 4034.522 kb on + strand, within PP_3556at 4034.522 kb on + strand, within PP_3556at 4034.522 kb on + strand, within PP_3556at 4034.523 kb on - strand, within PP_3556at 4034.523 kb on - strand, within PP_3556at 4034.523 kb on - strand, within PP_3556at 4034.666 kb on - strandat 4034.713 kb on - strandat 4034.713 kb on - strandat 4034.910 kb on + strandat 4034.911 kb on - strandat 4034.911 kb on - strandat 4034.925 kb on + strandat 4035.178 kb on + strand, within PP_3557at 4035.178 kb on + strand, within PP_3557at 4035.421 kb on + strand, within PP_3557at 4035.531 kb on - strand, within PP_3557at 4035.564 kb on - strand, within PP_3557at 4035.564 kb on - strand, within PP_3557at 4035.571 kb on + strand, within PP_3557at 4035.571 kb on + strand, within PP_3557at 4035.571 kb on + strand, within PP_3557at 4035.571 kb on + strand, within PP_3557at 4035.572 kb on - strand, within PP_3557at 4035.577 kb on + strand, within PP_3557at 4035.577 kb on + strand, within PP_3557at 4035.584 kb on + strand, within PP_3557at 4035.679 kb on - strand, within PP_3557

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,032,714 + PP_3555 0.35 -1.8
4,032,715 - PP_3555 0.35 -2.4
4,032,715 - PP_3555 0.35 -2.1
4,032,775 + PP_3555 0.41 -2.3
4,032,775 + PP_3555 0.41 -0.2
4,032,813 + PP_3555 0.45 -1.3
4,032,813 + PP_3555 0.45 -1.0
4,032,814 - PP_3555 0.45 -0.7
4,032,951 + PP_3555 0.58 -1.0
4,033,098 + PP_3555 0.73 +1.3
4,033,098 + PP_3555 0.73 -0.2
4,033,099 - PP_3555 0.73 +0.4
4,033,099 - PP_3555 0.73 +0.2
4,033,099 - PP_3555 0.73 -0.4
4,033,245 + PP_3555 0.88 +2.3
4,033,246 - PP_3555 0.88 -2.8
4,033,246 - PP_3555 0.88 -3.3
4,033,246 - PP_3555 0.88 +0.2
4,033,303 - +0.6
4,033,385 + +0.2
4,033,385 + -0.7
4,033,386 - -0.2
4,033,386 - +1.1
4,033,386 - +0.0
4,033,434 - -0.5
4,033,434 - +0.3
4,033,434 - -1.3
4,033,560 + PP_3556 0.13 +1.7
4,033,578 + PP_3556 0.15 -3.2
4,033,579 - PP_3556 0.15 +0.8
4,034,003 + PP_3556 0.47 -2.5
4,034,003 + PP_3556 0.47 +0.5
4,034,004 - PP_3556 0.47 -0.6
4,034,048 + PP_3556 0.50 -0.7
4,034,048 + PP_3556 0.50 +1.3
4,034,049 - PP_3556 0.50 -0.7
4,034,049 - PP_3556 0.50 +0.1
4,034,231 + +0.2
4,034,231 + PP_3556 0.64 +1.2
4,034,231 + PP_3556 0.64 +0.4
4,034,232 - PP_3556 0.64 +2.0
4,034,232 - PP_3556 0.64 +0.8
4,034,283 + PP_3556 0.68 -3.0
4,034,304 - PP_3556 0.70 -2.6
4,034,317 + PP_3556 0.71 +1.0
4,034,318 - PP_3556 0.71 +1.0
4,034,522 + PP_3556 0.86 +0.9
4,034,522 + PP_3556 0.86 -1.5
4,034,522 + PP_3556 0.86 +0.4
4,034,523 - PP_3556 0.86 +2.3
4,034,523 - PP_3556 0.86 +2.1
4,034,523 - PP_3556 0.86 -0.2
4,034,666 - -0.8
4,034,713 - +0.5
4,034,713 - +0.1
4,034,910 + +1.4
4,034,911 - +0.3
4,034,911 - -1.4
4,034,925 + +1.6
4,035,178 + PP_3557 0.11 +0.6
4,035,178 + PP_3557 0.11 -1.2
4,035,421 + PP_3557 0.22 -1.1
4,035,531 - PP_3557 0.27 -2.0
4,035,564 - PP_3557 0.29 -1.9
4,035,564 - PP_3557 0.29 -0.2
4,035,571 + PP_3557 0.29 -3.8
4,035,571 + PP_3557 0.29 +1.3
4,035,571 + PP_3557 0.29 +0.3
4,035,571 + PP_3557 0.29 +1.3
4,035,572 - PP_3557 0.29 -3.0
4,035,577 + PP_3557 0.29 -0.6
4,035,577 + PP_3557 0.29 +0.4
4,035,584 + PP_3557 0.30 -0.8
4,035,679 - PP_3557 0.34 +0.3

Or see this region's nucleotide sequence