Strain Fitness in Pseudomonas putida KT2440 around PP_2872

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2870 and PP_2871 are separated by 22 nucleotidesPP_2871 and PP_2872 are separated by 162 nucleotidesPP_2872 and PP_2873 are separated by 70 nucleotidesPP_2873 and PP_5540 are separated by 138 nucleotidesPP_5540 and PP_2874 are separated by 141 nucleotides PP_2870: PP_2870 - putative spermidine/putrescine-binding periplasmic protein, at 3,272,259 to 3,273,302 _2870 PP_2871: PP_2871 - Class II aldolase/adducin domain protein, at 3,273,325 to 3,274,080 _2871 PP_2872: PP_2872 - O-acetylserine/cysteine export transporter, at 3,274,243 to 3,275,127 _2872 PP_2873: PP_2873 - conserved protein of unknown function, UPF0145 family, at 3,275,198 to 3,275,518 _2873 PP_5540: PP_5540 - conserved protein of unknown function, at 3,275,657 to 3,275,845 _5540 PP_2874: PP_2874 - conserved protein of unknown function, at 3,275,987 to 3,276,298 _2874 Position (kb) 3274 3275 3276Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3273.300 kb on + strandat 3273.301 kb on - strandat 3273.301 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.342 kb on - strandat 3273.417 kb on + strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.418 kb on - strand, within PP_2871at 3273.719 kb on - strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.862 kb on + strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.863 kb on - strand, within PP_2871at 3273.865 kb on + strand, within PP_2871at 3273.865 kb on + strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.866 kb on - strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.920 kb on + strand, within PP_2871at 3273.921 kb on - strand, within PP_2871at 3273.921 kb on - strand, within PP_2871at 3274.069 kb on + strandat 3274.105 kb on + strandat 3274.106 kb on - strandat 3274.106 kb on - strandat 3274.146 kb on - strandat 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.483 kb on + strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.484 kb on - strand, within PP_2872at 3274.720 kb on - strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.848 kb on + strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.849 kb on - strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.879 kb on + strand, within PP_2872at 3274.880 kb on - strand, within PP_2872at 3274.880 kb on - strand, within PP_2872at 3275.082 kb on - strandat 3275.082 kb on - strandat 3275.134 kb on + strandat 3275.134 kb on + strandat 3275.135 kb on - strandat 3275.159 kb on - strandat 3275.246 kb on + strand, within PP_2873at 3275.246 kb on + strand, within PP_2873at 3275.285 kb on + strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.286 kb on - strand, within PP_2873at 3275.464 kb on - strand, within PP_2873at 3275.484 kb on + strand, within PP_2873at 3275.484 kb on + strand, within PP_2873at 3275.516 kb on + strandat 3275.516 kb on + strandat 3275.517 kb on - strandat 3275.913 kb on + strandat 3275.913 kb on + strandat 3276.014 kb on + strandat 3276.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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3,273,300 + -0.2
3,273,301 - +0.3
3,273,301 - +0.1
3,273,342 - +1.4
3,273,342 - -0.1
3,273,342 - -4.0
3,273,342 - -0.6
3,273,417 + PP_2871 0.12 -0.7
3,273,418 - PP_2871 0.12 -0.7
3,273,418 - PP_2871 0.12 +0.2
3,273,418 - PP_2871 0.12 -0.8
3,273,418 - PP_2871 0.12 +0.8
3,273,719 - PP_2871 0.52 -0.7
3,273,862 + PP_2871 0.71 -1.0
3,273,862 + PP_2871 0.71 -0.8
3,273,862 + PP_2871 0.71 +0.4
3,273,862 + PP_2871 0.71 -0.8
3,273,862 + PP_2871 0.71 +0.5
3,273,863 - PP_2871 0.71 +0.7
3,273,863 - PP_2871 0.71 -2.4
3,273,863 - PP_2871 0.71 -0.5
3,273,865 + PP_2871 0.71 +0.4
3,273,865 + PP_2871 0.71 -0.2
3,273,866 - PP_2871 0.72 -0.7
3,273,866 - PP_2871 0.72 +1.4
3,273,866 - PP_2871 0.72 +0.9
3,273,920 + PP_2871 0.79 +1.2
3,273,920 + PP_2871 0.79 +0.4
3,273,920 + PP_2871 0.79 +0.2
3,273,921 - PP_2871 0.79 -0.1
3,273,921 - PP_2871 0.79 -0.8
3,274,069 + +0.3
3,274,105 + +0.5
3,274,106 - +1.5
3,274,106 - -1.5
3,274,146 - -0.0
3,274,483 + PP_2872 0.27 +0.4
3,274,483 + PP_2872 0.27 +1.1
3,274,483 + PP_2872 0.27 -1.2
3,274,483 + PP_2872 0.27 -4.2
3,274,483 + PP_2872 0.27 -0.8
3,274,484 - PP_2872 0.27 +0.0
3,274,484 - PP_2872 0.27 +0.1
3,274,484 - PP_2872 0.27 -0.8
3,274,720 - PP_2872 0.54 -2.0
3,274,848 + PP_2872 0.68 -2.3
3,274,848 + PP_2872 0.68 -0.3
3,274,849 - PP_2872 0.68 +0.5
3,274,849 - PP_2872 0.68 +0.4
3,274,879 + PP_2872 0.72 -0.4
3,274,879 + PP_2872 0.72 -0.3
3,274,880 - PP_2872 0.72 -0.1
3,274,880 - PP_2872 0.72 -0.8
3,275,082 - +1.0
3,275,082 - +0.6
3,275,134 + +1.0
3,275,134 + -0.6
3,275,135 - -0.4
3,275,159 - +0.1
3,275,246 + PP_2873 0.15 +0.5
3,275,246 + PP_2873 0.15 +0.5
3,275,285 + PP_2873 0.27 +1.0
3,275,286 - PP_2873 0.27 -0.5
3,275,286 - PP_2873 0.27 +1.2
3,275,286 - PP_2873 0.27 +1.3
3,275,464 - PP_2873 0.83 -0.7
3,275,484 + PP_2873 0.89 -0.6
3,275,484 + PP_2873 0.89 +0.6
3,275,516 + -2.2
3,275,516 + -0.1
3,275,517 - -0.3
3,275,913 + +1.0
3,275,913 + -1.2
3,276,014 + -0.8
3,276,014 + +0.2

Or see this region's nucleotide sequence