Strain Fitness in Pseudomonas putida KT2440 around PP_1901

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1900 and PP_1901 are separated by 44 nucleotidesPP_1901 and PP_1902 overlap by 4 nucleotidesPP_1902 and PP_1903 overlap by 1 nucleotides PP_1900: PP_1900 - Tetraacyldisaccharide 4'-kinase, at 2,143,652 to 2,144,656 _1900 PP_1901: PP_1901 - conserved protein of unknown function, UPF0434 family, at 2,144,701 to 2,144,886 _1901 PP_1902: PP_1902 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,144,883 to 2,145,647 _1902 PP_1903: PP_1903 - putative phosphotyrosine-protein phosphatase, at 2,145,647 to 2,146,111 _1903 Position (kb) 2144 2145Strain fitness (log2 ratio) -1 0 1at 2144.686 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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2,144,686 + +1.0

Or see this region's nucleotide sequence