Experiment: Growth at pH6 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5091 and PP_5092 are separated by 164 nucleotides PP_5092 and PP_5093 are separated by 128 nucleotides PP_5093 and PP_5094 are separated by 53 nucleotides PP_5094 and PP_5095 are separated by 38 nucleotides
PP_5091: PP_5091 - conserved membrane protein of unknown function, at 5,815,607 to 5,816,026
_5091
PP_5092: PP_5092 - putative exported NLP/P60 protein, at 5,816,191 to 5,816,814
_5092
PP_5093: PP_5093 - twitching motility protein, at 5,816,943 to 5,817,953
_5093
PP_5094: PP_5094 - putative enzyme with PLP binding domain, at 5,818,007 to 5,818,693
_5094
PP_5095: PP_5095 - pyrroline-5-carboxylate reductase, at 5,818,732 to 5,819,550
_5095
Position (kb) 5816
5817
5818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5815.968 kb on + strand, within PP_5091 at 5816.016 kb on + strand at 5816.016 kb on + strand at 5816.017 kb on - strand at 5816.030 kb on + strand at 5816.096 kb on - strand at 5816.126 kb on + strand at 5816.126 kb on + strand at 5816.127 kb on - strand at 5816.127 kb on - strand at 5816.147 kb on + strand at 5816.147 kb on + strand at 5816.147 kb on + strand at 5816.167 kb on + strand at 5816.167 kb on + strand at 5816.167 kb on + strand at 5816.167 kb on + strand at 5816.167 kb on + strand at 5816.168 kb on - strand at 5816.168 kb on - strand at 5816.168 kb on - strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.171 kb on + strand at 5816.172 kb on - strand at 5816.172 kb on - strand at 5816.172 kb on - strand at 5816.177 kb on + strand at 5816.177 kb on + strand at 5816.177 kb on + strand at 5816.177 kb on + strand at 5816.178 kb on - strand at 5816.190 kb on + strand at 5816.190 kb on + strand at 5816.190 kb on + strand at 5816.190 kb on + strand at 5816.191 kb on - strand at 5816.191 kb on - strand at 5816.229 kb on - strand at 5816.231 kb on + strand at 5816.231 kb on + strand at 5816.231 kb on + strand at 5816.294 kb on - strand, within PP_5092 at 5816.295 kb on + strand, within PP_5092 at 5816.295 kb on + strand, within PP_5092 at 5816.295 kb on + strand, within PP_5092 at 5816.296 kb on - strand, within PP_5092 at 5816.296 kb on - strand, within PP_5092 at 5816.296 kb on - strand, within PP_5092 at 5816.435 kb on + strand, within PP_5092 at 5816.448 kb on + strand, within PP_5092 at 5816.455 kb on + strand, within PP_5092 at 5816.455 kb on + strand, within PP_5092 at 5816.456 kb on - strand, within PP_5092 at 5816.456 kb on - strand, within PP_5092 at 5816.456 kb on - strand, within PP_5092 at 5816.456 kb on - strand, within PP_5092 at 5816.456 kb on - strand, within PP_5092 at 5816.512 kb on + strand, within PP_5092 at 5816.513 kb on - strand, within PP_5092 at 5816.657 kb on + strand, within PP_5092 at 5816.657 kb on + strand, within PP_5092 at 5816.657 kb on + strand, within PP_5092 at 5816.665 kb on + strand, within PP_5092 at 5816.665 kb on + strand, within PP_5092 at 5816.666 kb on - strand, within PP_5092 at 5816.666 kb on - strand, within PP_5092 at 5816.666 kb on - strand, within PP_5092 at 5816.666 kb on - strand, within PP_5092 at 5816.741 kb on - strand, within PP_5092 at 5816.755 kb on + strand at 5816.755 kb on + strand at 5816.755 kb on + strand at 5816.755 kb on + strand at 5816.755 kb on + strand at 5816.756 kb on - strand at 5816.870 kb on + strand at 5816.899 kb on + strand at 5816.899 kb on + strand at 5816.899 kb on + strand at 5816.899 kb on + strand at 5816.899 kb on + strand at 5816.899 kb on + strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.900 kb on - strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.944 kb on + strand at 5816.945 kb on - strand at 5816.945 kb on - strand at 5816.945 kb on - strand at 5817.659 kb on + strand, within PP_5093 at 5817.833 kb on + strand, within PP_5093 at 5817.941 kb on + strand at 5817.941 kb on + strand at 5817.941 kb on + strand at 5817.941 kb on + strand at 5817.942 kb on - strand at 5817.942 kb on - strand at 5817.942 kb on - strand at 5817.942 kb on - strand at 5817.942 kb on - strand at 5817.969 kb on + strand at 5817.969 kb on + strand at 5817.970 kb on - strand at 5817.970 kb on - strand at 5817.970 kb on - strand at 5818.017 kb on + strand at 5818.018 kb on - strand at 5818.018 kb on - strand at 5818.178 kb on + strand, within PP_5094 at 5818.182 kb on + strand, within PP_5094 at 5818.183 kb on - strand, within PP_5094 at 5818.183 kb on - strand, within PP_5094 at 5818.405 kb on + strand, within PP_5094 at 5818.405 kb on + strand, within PP_5094 at 5818.405 kb on + strand, within PP_5094 at 5818.406 kb on - strand, within PP_5094 at 5818.431 kb on + strand, within PP_5094 at 5818.746 kb on + strand at 5818.746 kb on + strand at 5818.746 kb on + strand at 5818.747 kb on - strand at 5818.747 kb on - strand at 5818.747 kb on - strand at 5818.747 kb on - strand at 5818.747 kb on - strand at 5818.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate remove 5,815,968 + PP_5091 0.86 +1.1 5,816,016 + -2.7 5,816,016 + +0.6 5,816,017 - +1.1 5,816,030 + +0.0 5,816,096 - -0.9 5,816,126 + -0.1 5,816,126 + -0.1 5,816,127 - -1.0 5,816,127 - -0.1 5,816,147 + +0.9 5,816,147 + +0.6 5,816,147 + +0.8 5,816,167 + -3.2 5,816,167 + +1.1 5,816,167 + -1.1 5,816,167 + +2.1 5,816,167 + -2.8 5,816,168 - -0.4 5,816,168 - -0.3 5,816,168 - +0.1 5,816,171 + +1.5 5,816,171 + -0.3 5,816,171 + +0.3 5,816,171 + +0.7 5,816,171 + -2.6 5,816,171 + -3.8 5,816,171 + -0.2 5,816,172 - -1.2 5,816,172 - +0.7 5,816,172 - -3.9 5,816,177 + +0.7 5,816,177 + +0.6 5,816,177 + -0.2 5,816,177 + -1.6 5,816,178 - +1.7 5,816,190 + -4.1 5,816,190 + +0.7 5,816,190 + +0.4 5,816,190 + -1.2 5,816,191 - -1.1 5,816,191 - -2.7 5,816,229 - +2.4 5,816,231 + -2.6 5,816,231 + +1.2 5,816,231 + +0.6 5,816,294 - PP_5092 0.17 +1.4 5,816,295 + PP_5092 0.17 +0.5 5,816,295 + PP_5092 0.17 +0.4 5,816,295 + PP_5092 0.17 -0.1 5,816,296 - PP_5092 0.17 +0.4 5,816,296 - PP_5092 0.17 -0.9 5,816,296 - PP_5092 0.17 -1.6 5,816,435 + PP_5092 0.39 -1.9 5,816,448 + PP_5092 0.41 -3.2 5,816,455 + PP_5092 0.42 -0.7 5,816,455 + PP_5092 0.42 +1.1 5,816,456 - PP_5092 0.42 +1.5 5,816,456 - PP_5092 0.42 -2.9 5,816,456 - PP_5092 0.42 +0.5 5,816,456 - PP_5092 0.42 +0.8 5,816,456 - PP_5092 0.42 -0.2 5,816,512 + PP_5092 0.51 +1.0 5,816,513 - PP_5092 0.52 +0.2 5,816,657 + PP_5092 0.75 +1.1 5,816,657 + PP_5092 0.75 +0.4 5,816,657 + PP_5092 0.75 +1.3 5,816,665 + PP_5092 0.76 -0.1 5,816,665 + PP_5092 0.76 +0.9 5,816,666 - PP_5092 0.76 -2.0 5,816,666 - PP_5092 0.76 +0.8 5,816,666 - PP_5092 0.76 -2.0 5,816,666 - PP_5092 0.76 +1.6 5,816,741 - PP_5092 0.88 +0.8 5,816,755 + +1.4 5,816,755 + -2.0 5,816,755 + +1.1 5,816,755 + +0.9 5,816,755 + +0.3 5,816,756 - -1.1 5,816,870 + -0.5 5,816,899 + +0.3 5,816,899 + -3.1 5,816,899 + -0.0 5,816,899 + -0.6 5,816,899 + -0.9 5,816,899 + -0.3 5,816,900 - -1.8 5,816,900 - -2.5 5,816,900 - +1.3 5,816,900 - -0.5 5,816,900 - +0.7 5,816,900 - +0.7 5,816,900 - +0.8 5,816,944 + -1.2 5,816,944 + -0.8 5,816,944 + -2.2 5,816,944 + +0.6 5,816,944 + +1.6 5,816,944 + -2.2 5,816,944 + -0.3 5,816,944 + -0.6 5,816,945 - +0.1 5,816,945 - -2.6 5,816,945 - +0.2 5,817,659 + PP_5093 0.71 +0.8 5,817,833 + PP_5093 0.88 +1.4 5,817,941 + +1.2 5,817,941 + +0.2 5,817,941 + +0.5 5,817,941 + +0.2 5,817,942 - -0.9 5,817,942 - +0.6 5,817,942 - -3.1 5,817,942 - -2.9 5,817,942 - -3.8 5,817,969 + +0.3 5,817,969 + +0.4 5,817,970 - +0.9 5,817,970 - -1.2 5,817,970 - +0.6 5,818,017 + -1.9 5,818,018 - -2.0 5,818,018 - +0.6 5,818,178 + PP_5094 0.25 +0.7 5,818,182 + PP_5094 0.25 +0.6 5,818,183 - PP_5094 0.26 -2.8 5,818,183 - PP_5094 0.26 +0.3 5,818,405 + PP_5094 0.58 +0.9 5,818,405 + PP_5094 0.58 -0.8 5,818,405 + PP_5094 0.58 -0.4 5,818,406 - PP_5094 0.58 +0.2 5,818,431 + PP_5094 0.62 +0.5 5,818,746 + -2.9 5,818,746 + +1.1 5,818,746 + -0.4 5,818,747 - -1.2 5,818,747 - -0.9 5,818,747 - -0.6 5,818,747 - -1.4 5,818,747 - -1.2 5,818,747 - -0.1
Or see this region's nucleotide sequence