Strain Fitness in Pseudomonas putida KT2440 around PP_4180

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4179 and PP_4180 are separated by 69 nucleotidesPP_4180 and PP_4181 overlap by 4 nucleotidesPP_4181 and PP_5661 are separated by 154 nucleotidesPP_5661 and PP_4183 are separated by 67 nucleotides PP_4179: PP_4179 - Chaperone protein HtpG, at 4,721,659 to 4,723,563 _4179 PP_4180: PP_4180 - conserved protein of unknown function, at 4,723,633 to 4,724,115 _4180 PP_4181: PP_4181 - conserved protein of unknown function, at 4,724,112 to 4,724,588 _4181 PP_5661: PP_5661 - putative lipoprotein, at 4,724,743 to 4,725,015 _5661 PP_4183: PP_4183 - conserved membrane protein of unknown function, at 4,725,083 to 4,725,832 _4183 Position (kb) 4723 4724 4725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4722.648 kb on - strand, within PP_4179at 4722.648 kb on - strand, within PP_4179at 4722.648 kb on - strand, within PP_4179at 4722.680 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.710 kb on + strand, within PP_4179at 4722.711 kb on - strand, within PP_4179at 4722.711 kb on - strand, within PP_4179at 4722.725 kb on + strand, within PP_4179at 4722.725 kb on + strand, within PP_4179at 4722.725 kb on + strand, within PP_4179at 4722.726 kb on - strand, within PP_4179at 4722.726 kb on - strand, within PP_4179at 4722.797 kb on + strandat 4722.797 kb on + strand, within PP_4179at 4722.798 kb on - strand, within PP_4179at 4722.798 kb on - strand, within PP_4179at 4722.798 kb on - strand, within PP_4179at 4722.810 kb on - strand, within PP_4179at 4723.137 kb on - strand, within PP_4179at 4723.137 kb on - strand, within PP_4179at 4723.173 kb on - strand, within PP_4179at 4723.793 kb on + strand, within PP_4180at 4723.797 kb on + strandat 4723.798 kb on - strand, within PP_4180at 4723.824 kb on - strand, within PP_4180at 4723.872 kb on - strand, within PP_4180at 4723.872 kb on - strand, within PP_4180at 4723.884 kb on - strand, within PP_4180at 4724.269 kb on + strand, within PP_4181at 4724.269 kb on + strand, within PP_4181at 4724.269 kb on + strand, within PP_4181at 4724.270 kb on - strand, within PP_4181at 4724.287 kb on + strand, within PP_4181at 4724.287 kb on + strand, within PP_4181at 4724.287 kb on + strand, within PP_4181at 4724.287 kb on + strand, within PP_4181at 4724.288 kb on - strand, within PP_4181at 4724.288 kb on - strand, within PP_4181at 4724.288 kb on - strandat 4724.288 kb on - strand, within PP_4181at 4724.288 kb on - strand, within PP_4181at 4724.288 kb on - strand, within PP_4181at 4724.320 kb on + strand, within PP_4181at 4724.320 kb on + strand, within PP_4181at 4724.321 kb on - strand, within PP_4181at 4724.321 kb on - strand, within PP_4181at 4724.622 kb on - strandat 4724.644 kb on - strandat 4724.656 kb on + strandat 4724.656 kb on + strandat 4724.657 kb on - strandat 4724.657 kb on - strandat 4724.658 kb on + strandat 4724.658 kb on + strandat 4724.659 kb on - strandat 4724.659 kb on - strandat 4724.659 kb on - strandat 4724.660 kb on + strandat 4724.660 kb on + strandat 4724.661 kb on - strandat 4724.661 kb on - strandat 4724.691 kb on + strandat 4724.749 kb on - strandat 4724.749 kb on - strandat 4724.749 kb on - strandat 4724.749 kb on - strandat 4724.805 kb on + strand, within PP_5661at 4724.806 kb on - strand, within PP_5661at 4724.883 kb on + strand, within PP_5661at 4724.985 kb on + strand, within PP_5661at 4724.985 kb on + strand, within PP_5661at 4724.986 kb on - strand, within PP_5661at 4724.988 kb on + strandat 4724.988 kb on + strandat 4724.988 kb on + strandat 4724.988 kb on + strandat 4724.989 kb on - strandat 4725.013 kb on + strandat 4725.014 kb on - strandat 4725.014 kb on - strandat 4725.014 kb on - strandat 4725.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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4,722,648 - PP_4179 0.52 +0.7
4,722,648 - PP_4179 0.52 +0.9
4,722,648 - PP_4179 0.52 -0.0
4,722,680 + PP_4179 0.54 +2.7
4,722,710 + PP_4179 0.55 -1.2
4,722,710 + PP_4179 0.55 +2.2
4,722,710 + PP_4179 0.55 +0.4
4,722,710 + PP_4179 0.55 +0.0
4,722,710 + PP_4179 0.55 +0.5
4,722,710 + PP_4179 0.55 -0.5
4,722,711 - PP_4179 0.55 -1.7
4,722,711 - PP_4179 0.55 -3.1
4,722,725 + PP_4179 0.56 -0.5
4,722,725 + PP_4179 0.56 +1.8
4,722,725 + PP_4179 0.56 +0.2
4,722,726 - PP_4179 0.56 -1.7
4,722,726 - PP_4179 0.56 -2.0
4,722,797 + +1.7
4,722,797 + PP_4179 0.60 -3.5
4,722,798 - PP_4179 0.60 -0.3
4,722,798 - PP_4179 0.60 +0.7
4,722,798 - PP_4179 0.60 -0.5
4,722,810 - PP_4179 0.60 -3.8
4,723,137 - PP_4179 0.78 +0.2
4,723,137 - PP_4179 0.78 -0.9
4,723,173 - PP_4179 0.79 -1.1
4,723,793 + PP_4180 0.33 +1.8
4,723,797 + +2.7
4,723,798 - PP_4180 0.34 +0.1
4,723,824 - PP_4180 0.40 -3.6
4,723,872 - PP_4180 0.49 +1.1
4,723,872 - PP_4180 0.49 +1.4
4,723,884 - PP_4180 0.52 +0.5
4,724,269 + PP_4181 0.33 -0.2
4,724,269 + PP_4181 0.33 +0.3
4,724,269 + PP_4181 0.33 -0.6
4,724,270 - PP_4181 0.33 -0.7
4,724,287 + PP_4181 0.37 +0.2
4,724,287 + PP_4181 0.37 -2.6
4,724,287 + PP_4181 0.37 +1.1
4,724,287 + PP_4181 0.37 -0.7
4,724,288 - PP_4181 0.37 +0.3
4,724,288 - PP_4181 0.37 +1.2
4,724,288 - -0.6
4,724,288 - PP_4181 0.37 -0.4
4,724,288 - PP_4181 0.37 -0.2
4,724,288 - PP_4181 0.37 +0.6
4,724,320 + PP_4181 0.44 -3.2
4,724,320 + PP_4181 0.44 -0.2
4,724,321 - PP_4181 0.44 +0.2
4,724,321 - PP_4181 0.44 +0.4
4,724,622 - -0.2
4,724,644 - -1.7
4,724,656 + -0.3
4,724,656 + -3.6
4,724,657 - +0.4
4,724,657 - -2.0
4,724,658 + -2.0
4,724,658 + +0.5
4,724,659 - +0.0
4,724,659 - -1.5
4,724,659 - -2.9
4,724,660 + +1.3
4,724,660 + -0.8
4,724,661 - +0.9
4,724,661 - -1.3
4,724,691 + -3.2
4,724,749 - -1.0
4,724,749 - +0.5
4,724,749 - +1.0
4,724,749 - +0.6
4,724,805 + PP_5661 0.23 -1.4
4,724,806 - PP_5661 0.23 +0.1
4,724,883 + PP_5661 0.51 -2.1
4,724,985 + PP_5661 0.89 -2.9
4,724,985 + PP_5661 0.89 -3.9
4,724,986 - PP_5661 0.89 -3.0
4,724,988 + -0.7
4,724,988 + +1.5
4,724,988 + -0.6
4,724,988 + +1.6
4,724,989 - +0.7
4,725,013 + -0.5
4,725,014 - -2.3
4,725,014 - +0.4
4,725,014 - +1.7
4,725,021 + +1.5

Or see this region's nucleotide sequence