Strain Fitness in Pseudomonas putida KT2440 around PP_3408

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3406 and PP_3407 overlap by 4 nucleotidesPP_3407 and PP_3408 are separated by 406 nucleotidesPP_3408 and PP_3409 overlap by 4 nucleotidesPP_3409 and PP_3410 are separated by 34 nucleotides PP_3406: PP_3406 - Acetyltransferase, GNAT family, at 3,856,947 to 3,857,426 _3406 PP_3407: PP_3407 - conserved protein of unknown function, at 3,857,423 to 3,857,653 _3407 PP_3408: PP_3408 - cobalt transporter subunit A, at 3,858,060 to 3,858,746 _3408 PP_3409: PP_3409 - putative Cobalamin biosynthesis protein cobE, at 3,858,743 to 3,859,132 _3409 PP_3410: PP_3410 - Precorrin-4 C(11)-methyltransferase, at 3,859,167 to 3,859,919 _3410 Position (kb) 3858 3859Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3857.148 kb on + strand, within PP_3406at 3857.149 kb on - strand, within PP_3406at 3857.154 kb on + strand, within PP_3406at 3857.154 kb on + strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.155 kb on - strand, within PP_3406at 3857.160 kb on + strand, within PP_3406at 3857.161 kb on - strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.190 kb on + strand, within PP_3406at 3857.191 kb on - strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.205 kb on + strand, within PP_3406at 3857.206 kb on - strand, within PP_3406at 3857.206 kb on - strand, within PP_3406at 3857.341 kb on - strand, within PP_3406at 3857.341 kb on - strand, within PP_3406at 3857.513 kb on + strand, within PP_3407at 3857.513 kb on + strand, within PP_3407at 3857.549 kb on + strand, within PP_3407at 3857.549 kb on + strand, within PP_3407at 3857.550 kb on - strand, within PP_3407at 3857.652 kb on - strandat 3857.670 kb on + strandat 3857.685 kb on + strandat 3857.686 kb on - strandat 3857.689 kb on - strandat 3857.833 kb on - strandat 3857.924 kb on - strandat 3857.968 kb on - strandat 3857.968 kb on - strandat 3858.052 kb on + strandat 3858.495 kb on - strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.592 kb on + strand, within PP_3408at 3858.593 kb on - strand, within PP_3408at 3858.758 kb on + strandat 3858.759 kb on - strandat 3858.797 kb on - strand, within PP_3409at 3858.942 kb on - strand, within PP_3409at 3858.942 kb on - strand, within PP_3409at 3858.965 kb on + strand, within PP_3409at 3858.965 kb on + strand, within PP_3409at 3858.966 kb on - strand, within PP_3409at 3859.098 kb on + strandat 3859.176 kb on + strandat 3859.176 kb on + strandat 3859.177 kb on - strandat 3859.177 kb on - strandat 3859.177 kb on - strandat 3859.423 kb on - strand, within PP_3410

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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3,857,148 + PP_3406 0.42 +0.2
3,857,149 - PP_3406 0.42 +1.0
3,857,154 + PP_3406 0.43 +0.8
3,857,154 + PP_3406 0.43 -3.2
3,857,155 - PP_3406 0.43 +0.1
3,857,155 - PP_3406 0.43 -3.4
3,857,155 - PP_3406 0.43 -0.1
3,857,160 + PP_3406 0.44 +0.1
3,857,161 - PP_3406 0.45 +1.5
3,857,190 + PP_3406 0.51 -1.1
3,857,190 + PP_3406 0.51 -0.6
3,857,190 + PP_3406 0.51 -1.6
3,857,190 + PP_3406 0.51 -1.3
3,857,191 - PP_3406 0.51 -0.3
3,857,205 + PP_3406 0.54 -1.6
3,857,205 + PP_3406 0.54 -4.4
3,857,205 + PP_3406 0.54 +0.6
3,857,205 + PP_3406 0.54 +0.1
3,857,205 + PP_3406 0.54 -4.3
3,857,206 - PP_3406 0.54 +0.8
3,857,206 - PP_3406 0.54 +1.7
3,857,341 - PP_3406 0.82 -0.6
3,857,341 - PP_3406 0.82 +1.6
3,857,513 + PP_3407 0.39 +0.2
3,857,513 + PP_3407 0.39 -2.2
3,857,549 + PP_3407 0.55 +1.8
3,857,549 + PP_3407 0.55 -0.6
3,857,550 - PP_3407 0.55 -0.2
3,857,652 - +0.6
3,857,670 + +0.8
3,857,685 + +1.8
3,857,686 - +0.2
3,857,689 - +2.2
3,857,833 - +0.9
3,857,924 - +0.5
3,857,968 - -0.4
3,857,968 - -4.4
3,858,052 + +0.6
3,858,495 - PP_3408 0.63 -4.1
3,858,592 + PP_3408 0.77 +0.9
3,858,592 + PP_3408 0.77 +1.0
3,858,592 + PP_3408 0.77 +2.2
3,858,593 - PP_3408 0.78 -1.3
3,858,758 + -1.4
3,858,759 - -0.7
3,858,797 - PP_3409 0.14 -3.9
3,858,942 - PP_3409 0.51 +0.2
3,858,942 - PP_3409 0.51 +0.8
3,858,965 + PP_3409 0.57 +1.0
3,858,965 + PP_3409 0.57 +0.5
3,858,966 - PP_3409 0.57 -1.2
3,859,098 + +0.7
3,859,176 + -4.5
3,859,176 + +0.9
3,859,177 - +0.8
3,859,177 - +0.3
3,859,177 - -3.0
3,859,423 - PP_3410 0.34 -1.2

Or see this region's nucleotide sequence