Strain Fitness in Pseudomonas putida KT2440 around PP_1970

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1969 and PP_1970 are separated by 66 nucleotidesPP_1970 and PP_1971 overlap by 8 nucleotidesPP_1971 and PP_t63 are separated by 230 nucleotidesPP_t63 and PP_1972 are separated by 62 nucleotides PP_1969: PP_1969 - putative Molybdenum cofactor biosynthesis protein A, at 2,230,784 to 2,231,797 _1969 PP_1970: PP_1970 - putative Lipoprotein, at 2,231,864 to 2,232,469 _1970 PP_1971: PP_1971 - conserved protein of unknown function, at 2,232,462 to 2,233,040 _1971 PP_t63: PP_t63 - tRNA-Asn, at 2,233,271 to 2,233,346 _t63 PP_1972: PP_1972 - aromatic-amino-acid aminotransferase, at 2,233,409 to 2,234,605 _1972 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2230.895 kb on + strand, within PP_1969at 2230.895 kb on + strand, within PP_1969at 2230.895 kb on + strand, within PP_1969at 2230.903 kb on + strand, within PP_1969at 2230.903 kb on + strand, within PP_1969at 2230.903 kb on + strandat 2230.904 kb on - strand, within PP_1969at 2230.904 kb on - strand, within PP_1969at 2230.907 kb on + strand, within PP_1969at 2230.908 kb on - strand, within PP_1969at 2230.908 kb on - strand, within PP_1969at 2230.908 kb on - strand, within PP_1969at 2230.914 kb on + strand, within PP_1969at 2230.914 kb on + strand, within PP_1969at 2230.914 kb on + strand, within PP_1969at 2230.915 kb on - strand, within PP_1969at 2230.986 kb on - strand, within PP_1969at 2231.024 kb on - strand, within PP_1969at 2231.065 kb on + strand, within PP_1969at 2231.332 kb on - strand, within PP_1969at 2231.332 kb on - strand, within PP_1969at 2231.348 kb on + strand, within PP_1969at 2231.442 kb on + strand, within PP_1969at 2231.442 kb on + strand, within PP_1969at 2231.442 kb on + strand, within PP_1969at 2231.487 kb on - strand, within PP_1969at 2231.487 kb on - strand, within PP_1969at 2231.528 kb on + strandat 2231.528 kb on + strand, within PP_1969at 2231.618 kb on - strand, within PP_1969at 2231.869 kb on + strandat 2231.869 kb on + strandat 2231.945 kb on + strand, within PP_1970at 2231.946 kb on - strand, within PP_1970at 2232.122 kb on + strand, within PP_1970at 2232.123 kb on - strand, within PP_1970at 2232.135 kb on + strand, within PP_1970at 2232.135 kb on + strand, within PP_1970at 2232.135 kb on + strand, within PP_1970at 2232.136 kb on - strand, within PP_1970at 2232.192 kb on + strand, within PP_1970at 2232.193 kb on - strand, within PP_1970at 2232.204 kb on - strand, within PP_1970at 2232.204 kb on - strand, within PP_1970at 2232.212 kb on + strand, within PP_1970at 2232.212 kb on + strand, within PP_1970at 2232.213 kb on - strand, within PP_1970at 2232.230 kb on - strand, within PP_1970at 2232.230 kb on - strand, within PP_1970at 2232.264 kb on - strand, within PP_1970at 2232.445 kb on + strandat 2232.612 kb on + strand, within PP_1971at 2232.612 kb on + strand, within PP_1971at 2232.613 kb on - strand, within PP_1971at 2232.613 kb on - strand, within PP_1971at 2232.615 kb on + strand, within PP_1971at 2232.615 kb on + strand, within PP_1971at 2232.615 kb on + strand, within PP_1971at 2232.615 kb on + strand, within PP_1971at 2232.616 kb on - strand, within PP_1971at 2232.662 kb on + strand, within PP_1971at 2232.663 kb on - strand, within PP_1971at 2232.663 kb on - strand, within PP_1971at 2232.663 kb on - strand, within PP_1971at 2232.690 kb on + strand, within PP_1971at 2232.690 kb on + strand, within PP_1971at 2232.690 kb on + strand, within PP_1971at 2232.691 kb on - strand, within PP_1971at 2232.702 kb on - strand, within PP_1971at 2232.800 kb on + strand, within PP_1971at 2232.888 kb on + strand, within PP_1971at 2232.888 kb on + strand, within PP_1971at 2232.888 kb on + strandat 2232.888 kb on + strand, within PP_1971at 2232.888 kb on + strand, within PP_1971at 2232.888 kb on + strand, within PP_1971at 2232.888 kb on + strand, within PP_1971at 2232.889 kb on - strandat 2232.889 kb on - strand, within PP_1971at 2232.922 kb on + strand, within PP_1971at 2232.922 kb on + strand, within PP_1971at 2232.922 kb on + strand, within PP_1971at 2232.923 kb on - strand, within PP_1971at 2233.017 kb on + strandat 2233.074 kb on + strandat 2233.137 kb on - strandat 2233.310 kb on + strand, within PP_t63at 2233.356 kb on + strandat 2233.357 kb on - strandat 2233.362 kb on - strandat 2233.410 kb on + strandat 2233.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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2,230,895 + PP_1969 0.11 +0.7
2,230,895 + PP_1969 0.11 -0.0
2,230,895 + PP_1969 0.11 -1.0
2,230,903 + PP_1969 0.12 -0.9
2,230,903 + PP_1969 0.12 +0.2
2,230,903 + +1.5
2,230,904 - PP_1969 0.12 +2.0
2,230,904 - PP_1969 0.12 -1.2
2,230,907 + PP_1969 0.12 +0.9
2,230,908 - PP_1969 0.12 -0.4
2,230,908 - PP_1969 0.12 +0.3
2,230,908 - PP_1969 0.12 +0.5
2,230,914 + PP_1969 0.13 +1.9
2,230,914 + PP_1969 0.13 -1.4
2,230,914 + PP_1969 0.13 -0.7
2,230,915 - PP_1969 0.13 +0.1
2,230,986 - PP_1969 0.20 +0.8
2,231,024 - PP_1969 0.24 +0.2
2,231,065 + PP_1969 0.28 -4.1
2,231,332 - PP_1969 0.54 +0.8
2,231,332 - PP_1969 0.54 -1.4
2,231,348 + PP_1969 0.56 -0.7
2,231,442 + PP_1969 0.65 +0.3
2,231,442 + PP_1969 0.65 -3.1
2,231,442 + PP_1969 0.65 -0.3
2,231,487 - PP_1969 0.69 -1.7
2,231,487 - PP_1969 0.69 +2.4
2,231,528 + -0.1
2,231,528 + PP_1969 0.73 -1.0
2,231,618 - PP_1969 0.82 +0.0
2,231,869 + +1.0
2,231,869 + +1.0
2,231,945 + PP_1970 0.13 +0.7
2,231,946 - PP_1970 0.14 +0.5
2,232,122 + PP_1970 0.43 +1.7
2,232,123 - PP_1970 0.43 +0.5
2,232,135 + PP_1970 0.45 -3.6
2,232,135 + PP_1970 0.45 -0.0
2,232,135 + PP_1970 0.45 +0.2
2,232,136 - PP_1970 0.45 +1.0
2,232,192 + PP_1970 0.54 +1.3
2,232,193 - PP_1970 0.54 +0.4
2,232,204 - PP_1970 0.56 -4.6
2,232,204 - PP_1970 0.56 -2.9
2,232,212 + PP_1970 0.57 +1.7
2,232,212 + PP_1970 0.57 +1.4
2,232,213 - PP_1970 0.58 +1.1
2,232,230 - PP_1970 0.60 +0.7
2,232,230 - PP_1970 0.60 +0.8
2,232,264 - PP_1970 0.66 +0.2
2,232,445 + +0.2
2,232,612 + PP_1971 0.26 +0.0
2,232,612 + PP_1971 0.26 +0.7
2,232,613 - PP_1971 0.26 +0.4
2,232,613 - PP_1971 0.26 -1.0
2,232,615 + PP_1971 0.26 -1.5
2,232,615 + PP_1971 0.26 -3.9
2,232,615 + PP_1971 0.26 -3.8
2,232,615 + PP_1971 0.26 -1.7
2,232,616 - PP_1971 0.27 +0.4
2,232,662 + PP_1971 0.35 -0.7
2,232,663 - PP_1971 0.35 -1.0
2,232,663 - PP_1971 0.35 +1.0
2,232,663 - PP_1971 0.35 -2.9
2,232,690 + PP_1971 0.39 -1.7
2,232,690 + PP_1971 0.39 -1.5
2,232,690 + PP_1971 0.39 -0.1
2,232,691 - PP_1971 0.40 -0.2
2,232,702 - PP_1971 0.41 +0.7
2,232,800 + PP_1971 0.58 -0.1
2,232,888 + PP_1971 0.74 -0.4
2,232,888 + PP_1971 0.74 -1.2
2,232,888 + +0.5
2,232,888 + PP_1971 0.74 +1.2
2,232,888 + PP_1971 0.74 +0.6
2,232,888 + PP_1971 0.74 -1.2
2,232,888 + PP_1971 0.74 +0.6
2,232,889 - +1.5
2,232,889 - PP_1971 0.74 -0.6
2,232,922 + PP_1971 0.79 -2.8
2,232,922 + PP_1971 0.79 +1.6
2,232,922 + PP_1971 0.79 +0.4
2,232,923 - PP_1971 0.80 +0.4
2,233,017 + +1.6
2,233,074 + -2.3
2,233,137 - -0.2
2,233,310 + PP_t63 0.51 +1.6
2,233,356 + -0.9
2,233,357 - +0.3
2,233,362 - -3.5
2,233,410 + +0.5
2,233,410 + +0.1

Or see this region's nucleotide sequence