Strain Fitness in Pseudomonas putida KT2440 around PP_1584

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1582 and PP_1583 are separated by 27 nucleotidesPP_1583 and PP_1584 overlap by 4 nucleotidesPP_1584 and PP_5476 are separated by 65 nucleotidesPP_5476 and PP_1585 are separated by 291 nucleotidesPP_1585 and PP_1586 are separated by 8 nucleotides PP_1582: PP_1582 - conserved protein of unknown function, at 1,774,821 to 1,775,897 _1582 PP_1583: PP_1583 - putative Structural protein P5, at 1,775,925 to 1,776,401 _1583 PP_1584: PP_1584 - conserved protein of unknown function, at 1,776,398 to 1,776,898 _1584 PP_5476: PP_5476 - conserved protein of unknown function, at 1,776,964 to 1,777,266 _5476 PP_1585: PP_1585 - putative Antidote protein, at 1,777,558 to 1,777,857 _1585 PP_1586: PP_1586 - putative Killer protein, at 1,777,866 to 1,778,144 _1586 Position (kb) 1776 1777Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1775.437 kb on - strand, within PP_1582at 1775.481 kb on - strand, within PP_1582at 1775.494 kb on - strand, within PP_1582at 1775.496 kb on + strand, within PP_1582at 1775.496 kb on + strand, within PP_1582at 1775.496 kb on + strand, within PP_1582at 1775.530 kb on + strand, within PP_1582at 1775.531 kb on - strand, within PP_1582at 1775.541 kb on + strand, within PP_1582at 1775.542 kb on - strand, within PP_1582at 1775.542 kb on - strand, within PP_1582at 1775.589 kb on + strand, within PP_1582at 1775.677 kb on - strand, within PP_1582at 1775.677 kb on - strand, within PP_1582at 1775.677 kb on - strand, within PP_1582at 1775.686 kb on + strand, within PP_1582at 1775.687 kb on - strand, within PP_1582at 1775.687 kb on - strand, within PP_1582at 1775.694 kb on + strand, within PP_1582at 1775.694 kb on + strandat 1775.695 kb on - strand, within PP_1582at 1775.695 kb on - strand, within PP_1582at 1775.715 kb on + strand, within PP_1582at 1775.715 kb on + strand, within PP_1582at 1775.715 kb on + strand, within PP_1582at 1775.716 kb on - strand, within PP_1582at 1775.809 kb on + strandat 1775.809 kb on + strandat 1775.809 kb on + strandat 1775.809 kb on + strandat 1775.810 kb on - strandat 1775.810 kb on - strandat 1775.810 kb on - strandat 1775.810 kb on - strandat 1775.855 kb on - strandat 1775.911 kb on - strandat 1776.126 kb on + strand, within PP_1583at 1776.127 kb on - strand, within PP_1583at 1776.191 kb on - strand, within PP_1583at 1776.231 kb on + strand, within PP_1583at 1776.231 kb on + strand, within PP_1583at 1776.232 kb on - strand, within PP_1583at 1776.459 kb on - strand, within PP_1584at 1776.477 kb on + strand, within PP_1584at 1776.477 kb on + strand, within PP_1584at 1776.477 kb on + strand, within PP_1584at 1776.478 kb on - strand, within PP_1584at 1776.478 kb on - strand, within PP_1584at 1776.830 kb on + strand, within PP_1584at 1776.831 kb on - strand, within PP_1584at 1776.831 kb on - strand, within PP_1584at 1776.831 kb on - strand, within PP_1584at 1776.831 kb on - strand, within PP_1584at 1776.846 kb on + strand, within PP_1584at 1776.872 kb on + strandat 1776.873 kb on - strandat 1776.873 kb on - strandat 1776.873 kb on - strandat 1776.924 kb on - strandat 1776.924 kb on - strandat 1776.924 kb on - strandat 1776.947 kb on + strandat 1776.963 kb on + strandat 1776.963 kb on + strandat 1776.963 kb on + strandat 1776.963 kb on + strandat 1776.964 kb on - strandat 1776.964 kb on - strandat 1776.964 kb on - strandat 1776.964 kb on - strandat 1776.964 kb on - strandat 1776.964 kb on - strandat 1776.974 kb on + strandat 1776.974 kb on + strandat 1776.974 kb on + strandat 1776.975 kb on - strandat 1776.975 kb on - strandat 1776.975 kb on - strandat 1776.975 kb on - strandat 1776.975 kb on - strandat 1777.106 kb on + strand, within PP_5476at 1777.106 kb on + strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.107 kb on - strand, within PP_5476at 1777.155 kb on - strand, within PP_5476at 1777.155 kb on - strand, within PP_5476at 1777.155 kb on - strand, within PP_5476at 1777.155 kb on - strand, within PP_5476at 1777.301 kb on + strandat 1777.302 kb on + strandat 1777.302 kb on + strandat 1777.303 kb on - strandat 1777.348 kb on - strandat 1777.417 kb on + strandat 1777.426 kb on + strandat 1777.427 kb on - strandat 1777.438 kb on + strandat 1777.438 kb on + strandat 1777.439 kb on - strandat 1777.496 kb on - strandat 1777.541 kb on + strandat 1777.542 kb on - strandat 1777.542 kb on - strandat 1777.751 kb on - strand, within PP_1585at 1777.751 kb on - strand, within PP_1585at 1777.843 kb on - strandat 1777.843 kb on - strandat 1777.843 kb on - strandat 1777.893 kb on - strandat 1777.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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1,775,437 - PP_1582 0.57 -0.6
1,775,481 - PP_1582 0.61 +0.8
1,775,494 - PP_1582 0.62 -3.5
1,775,496 + PP_1582 0.63 +0.5
1,775,496 + PP_1582 0.63 -1.3
1,775,496 + PP_1582 0.63 -0.3
1,775,530 + PP_1582 0.66 -4.8
1,775,531 - PP_1582 0.66 +1.6
1,775,541 + PP_1582 0.67 -0.0
1,775,542 - PP_1582 0.67 -3.6
1,775,542 - PP_1582 0.67 +0.8
1,775,589 + PP_1582 0.71 -0.1
1,775,677 - PP_1582 0.79 +0.1
1,775,677 - PP_1582 0.79 -0.9
1,775,677 - PP_1582 0.79 -3.0
1,775,686 + PP_1582 0.80 -0.9
1,775,687 - PP_1582 0.80 -0.3
1,775,687 - PP_1582 0.80 +1.1
1,775,694 + PP_1582 0.81 -1.5
1,775,694 + -1.5
1,775,695 - PP_1582 0.81 -0.2
1,775,695 - PP_1582 0.81 -0.5
1,775,715 + PP_1582 0.83 -1.7
1,775,715 + PP_1582 0.83 -0.5
1,775,715 + PP_1582 0.83 -2.8
1,775,716 - PP_1582 0.83 +1.2
1,775,809 + -1.7
1,775,809 + -1.8
1,775,809 + -0.4
1,775,809 + -2.0
1,775,810 - +0.7
1,775,810 - +0.0
1,775,810 - -0.2
1,775,810 - -0.5
1,775,855 - -0.2
1,775,911 - +0.6
1,776,126 + PP_1583 0.42 +2.0
1,776,127 - PP_1583 0.42 -4.3
1,776,191 - PP_1583 0.56 -2.5
1,776,231 + PP_1583 0.64 +0.4
1,776,231 + PP_1583 0.64 +1.0
1,776,232 - PP_1583 0.64 +0.3
1,776,459 - PP_1584 0.12 -0.3
1,776,477 + PP_1584 0.16 -0.1
1,776,477 + PP_1584 0.16 -2.1
1,776,477 + PP_1584 0.16 +0.1
1,776,478 - PP_1584 0.16 -0.6
1,776,478 - PP_1584 0.16 +0.5
1,776,830 + PP_1584 0.86 -1.0
1,776,831 - PP_1584 0.86 -1.5
1,776,831 - PP_1584 0.86 -2.8
1,776,831 - PP_1584 0.86 -2.5
1,776,831 - PP_1584 0.86 -1.8
1,776,846 + PP_1584 0.89 -3.8
1,776,872 + -0.1
1,776,873 - +1.6
1,776,873 - -0.8
1,776,873 - -4.0
1,776,924 - +0.5
1,776,924 - -2.0
1,776,924 - +1.5
1,776,947 + -2.6
1,776,963 + +0.5
1,776,963 + +0.3
1,776,963 + -0.1
1,776,963 + -1.4
1,776,964 - -1.1
1,776,964 - +0.9
1,776,964 - +0.0
1,776,964 - +0.2
1,776,964 - -0.7
1,776,964 - +1.2
1,776,974 + +0.4
1,776,974 + +0.9
1,776,974 + +0.8
1,776,975 - +0.6
1,776,975 - +0.9
1,776,975 - -3.4
1,776,975 - +0.7
1,776,975 - +0.2
1,777,106 + PP_5476 0.47 +2.3
1,777,106 + PP_5476 0.47 +1.1
1,777,107 - PP_5476 0.47 +1.1
1,777,107 - PP_5476 0.47 +1.0
1,777,107 - PP_5476 0.47 -1.4
1,777,107 - PP_5476 0.47 -3.3
1,777,107 - PP_5476 0.47 -0.1
1,777,107 - PP_5476 0.47 -3.7
1,777,155 - PP_5476 0.63 +0.7
1,777,155 - PP_5476 0.63 +0.4
1,777,155 - PP_5476 0.63 +1.5
1,777,155 - PP_5476 0.63 +0.5
1,777,301 + -0.7
1,777,302 + +1.4
1,777,302 + +0.9
1,777,303 - -0.4
1,777,348 - +0.4
1,777,417 + +0.9
1,777,426 + -1.7
1,777,427 - -0.2
1,777,438 + -2.3
1,777,438 + -0.3
1,777,439 - -0.0
1,777,496 - +0.2
1,777,541 + +1.0
1,777,542 - +1.1
1,777,542 - -4.4
1,777,751 - PP_1585 0.64 -0.3
1,777,751 - PP_1585 0.64 -3.0
1,777,843 - +1.9
1,777,843 - +2.1
1,777,843 - -1.0
1,777,893 - +1.3
1,777,893 - -0.2

Or see this region's nucleotide sequence