Strain Fitness in Pseudomonas putida KT2440 around PP_1513

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1511 and PP_1512 are separated by 2 nucleotidesPP_1512 and PP_1513 are separated by 104 nucleotidesPP_1513 and PP_1514 are separated by 192 nucleotides PP_1511: PP_1511 - conserved protein of unknown function, at 1,715,885 to 1,716,574 _1511 PP_1512: PP_1512 - conserved protein of unknown function, at 1,716,577 to 1,717,197 _1512 PP_1513: PP_1513 - Ribosomal RNA small subunit methyltransferase J, at 1,717,302 to 1,718,078 _1513 PP_1514: PP_1514 - conserved protein of unknown function, at 1,718,271 to 1,719,239 _1514 Position (kb) 1717 1718 1719Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1716.320 kb on + strand, within PP_1511at 1716.512 kb on + strandat 1717.023 kb on - strand, within PP_1512at 1717.023 kb on - strand, within PP_1512at 1717.023 kb on - strand, within PP_1512at 1717.091 kb on - strand, within PP_1512at 1717.145 kb on + strandat 1717.146 kb on - strandat 1717.166 kb on + strandat 1717.166 kb on + strandat 1717.167 kb on - strandat 1717.167 kb on - strandat 1717.167 kb on - strandat 1717.188 kb on + strandat 1717.189 kb on - strandat 1717.189 kb on - strandat 1717.189 kb on - strandat 1717.270 kb on - strandat 1717.351 kb on - strandat 1717.351 kb on - strandat 1717.594 kb on + strand, within PP_1513at 1717.825 kb on - strand, within PP_1513at 1717.825 kb on - strand, within PP_1513at 1718.019 kb on - strandat 1718.031 kb on - strandat 1718.044 kb on - strandat 1718.052 kb on + strandat 1718.052 kb on + strandat 1718.053 kb on - strandat 1718.087 kb on + strandat 1718.088 kb on - strandat 1718.110 kb on + strandat 1718.110 kb on + strandat 1718.110 kb on + strandat 1718.111 kb on - strandat 1718.111 kb on - strandat 1718.111 kb on - strandat 1718.111 kb on - strandat 1718.176 kb on + strandat 1718.188 kb on + strandat 1718.188 kb on + strandat 1718.189 kb on - strandat 1718.189 kb on - strandat 1718.202 kb on - strandat 1718.202 kb on - strandat 1718.214 kb on - strandat 1718.214 kb on - strandat 1718.220 kb on + strandat 1718.220 kb on + strandat 1718.255 kb on - strandat 1718.255 kb on - strandat 1718.270 kb on - strandat 1718.292 kb on + strandat 1718.292 kb on + strandat 1718.339 kb on - strandat 1718.339 kb on - strandat 1718.339 kb on - strandat 1718.479 kb on - strand, within PP_1514at 1718.508 kb on + strand, within PP_1514at 1718.508 kb on + strand, within PP_1514at 1718.509 kb on - strand, within PP_1514at 1718.509 kb on - strand, within PP_1514at 1718.598 kb on + strand, within PP_1514at 1718.598 kb on + strand, within PP_1514at 1718.599 kb on - strand, within PP_1514at 1718.599 kb on - strand, within PP_1514at 1718.616 kb on + strand, within PP_1514at 1718.617 kb on - strand, within PP_1514at 1718.617 kb on - strand, within PP_1514at 1718.697 kb on + strand, within PP_1514at 1718.698 kb on - strandat 1718.698 kb on - strand, within PP_1514at 1718.698 kb on - strand, within PP_1514at 1718.698 kb on - strand, within PP_1514at 1718.703 kb on + strand, within PP_1514at 1718.703 kb on + strand, within PP_1514at 1718.756 kb on + strand, within PP_1514at 1718.809 kb on + strand, within PP_1514at 1718.820 kb on - strand, within PP_1514at 1718.820 kb on - strand, within PP_1514at 1718.828 kb on - strand, within PP_1514at 1718.870 kb on + strand, within PP_1514at 1718.871 kb on - strand, within PP_1514at 1718.876 kb on - strand, within PP_1514at 1718.885 kb on + strand, within PP_1514at 1718.885 kb on + strand, within PP_1514at 1718.923 kb on + strand, within PP_1514at 1718.924 kb on - strand, within PP_1514at 1718.972 kb on + strand, within PP_1514

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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1,716,320 + PP_1511 0.63 -1.3
1,716,512 + -3.3
1,717,023 - PP_1512 0.72 -0.7
1,717,023 - PP_1512 0.72 -3.8
1,717,023 - PP_1512 0.72 -1.1
1,717,091 - PP_1512 0.83 -1.4
1,717,145 + +0.6
1,717,146 - +0.5
1,717,166 + +1.9
1,717,166 + -1.2
1,717,167 - -0.0
1,717,167 - +0.4
1,717,167 - -4.1
1,717,188 + +0.5
1,717,189 - -0.0
1,717,189 - +0.2
1,717,189 - +0.7
1,717,270 - +0.6
1,717,351 - +0.7
1,717,351 - -0.9
1,717,594 + PP_1513 0.38 +0.9
1,717,825 - PP_1513 0.67 +1.0
1,717,825 - PP_1513 0.67 +0.6
1,718,019 - -0.6
1,718,031 - -1.6
1,718,044 - +1.0
1,718,052 + +1.4
1,718,052 + +0.1
1,718,053 - +0.1
1,718,087 + +1.0
1,718,088 - +0.0
1,718,110 + +1.0
1,718,110 + +0.1
1,718,110 + +1.7
1,718,111 - +0.7
1,718,111 - +0.4
1,718,111 - -0.6
1,718,111 - -0.0
1,718,176 + +0.5
1,718,188 + +2.0
1,718,188 + +1.0
1,718,189 - -1.2
1,718,189 - -2.1
1,718,202 - -2.7
1,718,202 - -2.2
1,718,214 - -0.3
1,718,214 - +0.9
1,718,220 + -0.6
1,718,220 + -0.8
1,718,255 - +0.9
1,718,255 - -3.6
1,718,270 - -0.1
1,718,292 + +0.9
1,718,292 + +0.5
1,718,339 - +0.5
1,718,339 - +1.5
1,718,339 - +1.3
1,718,479 - PP_1514 0.21 -0.8
1,718,508 + PP_1514 0.24 +0.8
1,718,508 + PP_1514 0.24 +0.1
1,718,509 - PP_1514 0.25 -0.9
1,718,509 - PP_1514 0.25 -0.6
1,718,598 + PP_1514 0.34 -2.2
1,718,598 + PP_1514 0.34 -1.3
1,718,599 - PP_1514 0.34 +0.3
1,718,599 - PP_1514 0.34 +1.7
1,718,616 + PP_1514 0.36 +0.7
1,718,617 - PP_1514 0.36 -0.6
1,718,617 - PP_1514 0.36 +1.6
1,718,697 + PP_1514 0.44 -1.0
1,718,698 - -0.3
1,718,698 - PP_1514 0.44 +2.2
1,718,698 - PP_1514 0.44 +1.0
1,718,698 - PP_1514 0.44 +0.6
1,718,703 + PP_1514 0.45 +0.4
1,718,703 + PP_1514 0.45 +0.7
1,718,756 + PP_1514 0.50 -1.3
1,718,809 + PP_1514 0.56 +0.2
1,718,820 - PP_1514 0.57 +1.0
1,718,820 - PP_1514 0.57 +1.3
1,718,828 - PP_1514 0.57 +0.2
1,718,870 + PP_1514 0.62 +0.5
1,718,871 - PP_1514 0.62 +0.4
1,718,876 - PP_1514 0.62 +0.0
1,718,885 + PP_1514 0.63 -1.0
1,718,885 + PP_1514 0.63 +0.7
1,718,923 + PP_1514 0.67 +0.6
1,718,924 - PP_1514 0.67 +0.3
1,718,972 + PP_1514 0.72 -1.3

Or see this region's nucleotide sequence