Strain Fitness in Pseudomonas putida KT2440 around PP_1419

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1418 and PP_1419 are separated by 46 nucleotidesPP_1419 and PP_1420 are separated by 200 nucleotidesPP_1420 and PP_1421 overlap by 20 nucleotides PP_1418: PP_1418 - putative Tricarboxylate transport protein TctC, at 1,617,918 to 1,618,898 _1418 PP_1419: PP_1419 - tricarboxylate-specific outer membrane porin, at 1,618,945 to 1,620,234 _1419 PP_1420: PP_1420 - Transcriptional regulatory protein tctD, at 1,620,435 to 1,621,106 _1420 PP_1421: PP_1421 - putative Sensor histidine kinase TctE, at 1,621,087 to 1,622,478 _1421 Position (kb) 1618 1619 1620 1621Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1617.955 kb on + strandat 1617.956 kb on - strandat 1617.956 kb on - strandat 1617.979 kb on + strandat 1617.979 kb on + strandat 1617.980 kb on - strandat 1617.980 kb on - strandat 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.123 kb on + strand, within PP_1418at 1618.124 kb on - strand, within PP_1418at 1618.348 kb on + strand, within PP_1418at 1618.495 kb on + strand, within PP_1418at 1618.496 kb on - strand, within PP_1418at 1618.528 kb on + strand, within PP_1418at 1618.528 kb on + strand, within PP_1418at 1618.529 kb on - strand, within PP_1418at 1618.602 kb on - strand, within PP_1418at 1618.672 kb on + strand, within PP_1418at 1618.673 kb on - strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.702 kb on + strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.703 kb on - strand, within PP_1418at 1618.740 kb on + strand, within PP_1418at 1618.740 kb on + strand, within PP_1418at 1618.741 kb on - strand, within PP_1418at 1618.939 kb on - strandat 1618.964 kb on + strandat 1618.964 kb on + strandat 1618.965 kb on - strandat 1618.965 kb on - strandat 1618.965 kb on - strandat 1619.065 kb on + strandat 1619.066 kb on - strandat 1619.066 kb on - strandat 1619.066 kb on - strandat 1619.073 kb on - strandat 1619.073 kb on - strandat 1619.073 kb on - strandat 1619.147 kb on + strand, within PP_1419at 1619.196 kb on - strand, within PP_1419at 1619.202 kb on - strand, within PP_1419at 1619.268 kb on - strand, within PP_1419at 1619.268 kb on - strand, within PP_1419at 1619.289 kb on - strand, within PP_1419at 1619.355 kb on - strand, within PP_1419at 1619.355 kb on - strand, within PP_1419at 1619.501 kb on + strand, within PP_1419at 1619.506 kb on - strand, within PP_1419at 1619.506 kb on - strand, within PP_1419at 1619.528 kb on + strand, within PP_1419at 1619.528 kb on + strand, within PP_1419at 1619.558 kb on + strand, within PP_1419at 1619.559 kb on - strand, within PP_1419at 1619.855 kb on + strand, within PP_1419at 1620.077 kb on + strand, within PP_1419at 1620.078 kb on - strand, within PP_1419at 1620.078 kb on - strand, within PP_1419at 1620.190 kb on - strandat 1620.261 kb on - strandat 1620.318 kb on + strandat 1620.318 kb on + strandat 1620.318 kb on + strandat 1620.318 kb on + strandat 1620.394 kb on + strandat 1620.445 kb on + strandat 1620.446 kb on - strandat 1620.446 kb on - strandat 1620.514 kb on + strand, within PP_1420at 1620.514 kb on + strand, within PP_1420at 1620.514 kb on + strand, within PP_1420at 1620.515 kb on - strand, within PP_1420at 1620.515 kb on - strand, within PP_1420at 1620.515 kb on - strand, within PP_1420at 1620.567 kb on + strand, within PP_1420at 1620.567 kb on + strand, within PP_1420at 1620.567 kb on + strand, within PP_1420at 1620.568 kb on - strand, within PP_1420at 1620.619 kb on + strand, within PP_1420at 1620.619 kb on + strand, within PP_1420at 1620.620 kb on - strand, within PP_1420at 1620.662 kb on + strand, within PP_1420at 1620.663 kb on - strand, within PP_1420at 1620.663 kb on - strand, within PP_1420at 1620.782 kb on - strand, within PP_1420at 1620.782 kb on - strand, within PP_1420at 1620.782 kb on - strand, within PP_1420at 1620.834 kb on + strand, within PP_1420at 1620.834 kb on + strand, within PP_1420at 1620.834 kb on + strand, within PP_1420at 1620.835 kb on - strand, within PP_1420at 1621.011 kb on + strand, within PP_1420at 1621.137 kb on + strandat 1621.182 kb on + strandat 1621.183 kb on - strandat 1621.223 kb on - strandat 1621.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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1,617,955 + -2.0
1,617,956 - -1.0
1,617,956 - +0.7
1,617,979 + -4.2
1,617,979 + -1.2
1,617,980 - -4.9
1,617,980 - -2.3
1,618,093 + PP_1418 0.18 -4.3
1,618,093 + PP_1418 0.18 -2.3
1,618,093 + PP_1418 0.18 -2.7
1,618,123 + PP_1418 0.21 +0.5
1,618,124 - PP_1418 0.21 -4.0
1,618,348 + PP_1418 0.44 -1.0
1,618,495 + PP_1418 0.59 -3.5
1,618,496 - PP_1418 0.59 -4.3
1,618,528 + PP_1418 0.62 -4.0
1,618,528 + PP_1418 0.62 -2.3
1,618,529 - PP_1418 0.62 -3.1
1,618,602 - PP_1418 0.70 -3.9
1,618,672 + PP_1418 0.77 -0.6
1,618,673 - PP_1418 0.77 -2.5
1,618,702 + PP_1418 0.80 -4.2
1,618,702 + PP_1418 0.80 -2.0
1,618,702 + PP_1418 0.80 -3.7
1,618,702 + PP_1418 0.80 -3.3
1,618,703 - PP_1418 0.80 -3.9
1,618,703 - PP_1418 0.80 -3.3
1,618,703 - PP_1418 0.80 -0.3
1,618,703 - PP_1418 0.80 -3.6
1,618,740 + PP_1418 0.84 -0.8
1,618,740 + PP_1418 0.84 -2.8
1,618,741 - PP_1418 0.84 -3.1
1,618,939 - -3.2
1,618,964 + -4.0
1,618,964 + -0.2
1,618,965 - -1.0
1,618,965 - -2.3
1,618,965 - +0.3
1,619,065 + -2.8
1,619,066 - -0.2
1,619,066 - -3.5
1,619,066 - -1.2
1,619,073 - +0.1
1,619,073 - -1.4
1,619,073 - -3.9
1,619,147 + PP_1419 0.16 -1.7
1,619,196 - PP_1419 0.19 -1.4
1,619,202 - PP_1419 0.20 +0.7
1,619,268 - PP_1419 0.25 -1.3
1,619,268 - PP_1419 0.25 -1.3
1,619,289 - PP_1419 0.27 -0.6
1,619,355 - PP_1419 0.32 -0.7
1,619,355 - PP_1419 0.32 -3.3
1,619,501 + PP_1419 0.43 -2.8
1,619,506 - PP_1419 0.43 -1.6
1,619,506 - PP_1419 0.43 -3.1
1,619,528 + PP_1419 0.45 -4.2
1,619,528 + PP_1419 0.45 -4.2
1,619,558 + PP_1419 0.48 -3.5
1,619,559 - PP_1419 0.48 -0.3
1,619,855 + PP_1419 0.71 -3.7
1,620,077 + PP_1419 0.88 -4.1
1,620,078 - PP_1419 0.88 -3.6
1,620,078 - PP_1419 0.88 -1.1
1,620,190 - -2.3
1,620,261 - +0.9
1,620,318 + -0.1
1,620,318 + -3.2
1,620,318 + -1.6
1,620,318 + -0.4
1,620,394 + +1.9
1,620,445 + -4.3
1,620,446 - -4.1
1,620,446 - -4.3
1,620,514 + PP_1420 0.12 -1.5
1,620,514 + PP_1420 0.12 -3.7
1,620,514 + PP_1420 0.12 -3.9
1,620,515 - PP_1420 0.12 -4.0
1,620,515 - PP_1420 0.12 -0.6
1,620,515 - PP_1420 0.12 -2.1
1,620,567 + PP_1420 0.20 -3.7
1,620,567 + PP_1420 0.20 -3.2
1,620,567 + PP_1420 0.20 +0.7
1,620,568 - PP_1420 0.20 -4.0
1,620,619 + PP_1420 0.27 -4.2
1,620,619 + PP_1420 0.27 -0.3
1,620,620 - PP_1420 0.28 -0.5
1,620,662 + PP_1420 0.34 -4.6
1,620,663 - PP_1420 0.34 -4.6
1,620,663 - PP_1420 0.34 -3.8
1,620,782 - PP_1420 0.52 -4.5
1,620,782 - PP_1420 0.52 -2.9
1,620,782 - PP_1420 0.52 -3.0
1,620,834 + PP_1420 0.59 -4.3
1,620,834 + PP_1420 0.59 -2.1
1,620,834 + PP_1420 0.59 -4.5
1,620,835 - PP_1420 0.60 -3.7
1,621,011 + PP_1420 0.86 -3.6
1,621,137 + -3.1
1,621,182 + -1.9
1,621,183 - -3.3
1,621,223 - -3.5
1,621,223 - -4.3

Or see this region's nucleotide sequence