Strain Fitness in Pseudomonas putida KT2440 around PP_0921

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0920 and PP_0921 are separated by 17 nucleotidesPP_0921 and PP_0922 are separated by 150 nucleotidesPP_0922 and PP_0923 are separated by 112 nucleotides PP_0920: PP_0920 - Xenobiotic reductase B, at 1,062,839 to 1,063,888 _0920 PP_0921: PP_0921 - Transcriptional regulator, ArsR family, at 1,063,906 to 1,064,208 _0921 PP_0922: PP_0922 - conserved protein of unknown function, at 1,064,359 to 1,064,943 _0922 PP_0923: PP_0923 - Acyltransferase, at 1,065,056 to 1,065,844 _0923 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1063.044 kb on + strand, within PP_0920at 1063.044 kb on + strand, within PP_0920at 1063.045 kb on - strand, within PP_0920at 1063.045 kb on - strand, within PP_0920at 1063.152 kb on + strand, within PP_0920at 1063.152 kb on + strand, within PP_0920at 1063.152 kb on + strand, within PP_0920at 1063.152 kb on + strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strandat 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.153 kb on - strand, within PP_0920at 1063.223 kb on + strand, within PP_0920at 1063.223 kb on + strand, within PP_0920at 1063.425 kb on + strand, within PP_0920at 1063.479 kb on + strand, within PP_0920at 1063.480 kb on - strand, within PP_0920at 1063.561 kb on - strand, within PP_0920at 1063.576 kb on + strand, within PP_0920at 1063.576 kb on + strand, within PP_0920at 1063.577 kb on - strand, within PP_0920at 1063.577 kb on - strand, within PP_0920at 1063.655 kb on + strand, within PP_0920at 1063.655 kb on + strand, within PP_0920at 1063.655 kb on + strand, within PP_0920at 1063.685 kb on - strand, within PP_0920at 1063.758 kb on - strand, within PP_0920at 1063.758 kb on - strand, within PP_0920at 1063.758 kb on - strand, within PP_0920at 1063.761 kb on + strand, within PP_0920at 1063.761 kb on + strand, within PP_0920at 1063.761 kb on + strand, within PP_0920at 1063.762 kb on - strand, within PP_0920at 1063.764 kb on + strand, within PP_0920at 1063.764 kb on + strand, within PP_0920at 1063.764 kb on + strand, within PP_0920at 1063.765 kb on - strand, within PP_0920at 1063.765 kb on - strand, within PP_0920at 1063.835 kb on - strandat 1063.835 kb on - strandat 1063.835 kb on - strandat 1063.835 kb on - strandat 1063.895 kb on + strandat 1063.942 kb on + strand, within PP_0921at 1063.942 kb on + strand, within PP_0921at 1063.942 kb on + strand, within PP_0921at 1063.942 kb on + strand, within PP_0921at 1063.943 kb on - strand, within PP_0921at 1063.943 kb on - strand, within PP_0921at 1063.943 kb on - strand, within PP_0921at 1064.183 kb on - strandat 1064.272 kb on - strandat 1064.273 kb on + strandat 1064.280 kb on - strandat 1064.311 kb on + strandat 1064.322 kb on - strandat 1064.347 kb on + strandat 1064.348 kb on - strandat 1064.366 kb on - strandat 1064.366 kb on - strandat 1064.366 kb on - strandat 1064.366 kb on - strandat 1064.422 kb on + strand, within PP_0922at 1064.423 kb on - strand, within PP_0922at 1064.509 kb on + strand, within PP_0922at 1064.510 kb on - strandat 1064.510 kb on - strand, within PP_0922at 1064.632 kb on + strand, within PP_0922at 1064.632 kb on + strand, within PP_0922at 1064.633 kb on - strand, within PP_0922at 1064.672 kb on - strand, within PP_0922at 1064.758 kb on + strand, within PP_0922at 1064.759 kb on - strandat 1064.860 kb on + strand, within PP_0922at 1064.860 kb on + strand, within PP_0922at 1064.860 kb on + strand, within PP_0922at 1064.860 kb on + strand, within PP_0922at 1064.861 kb on - strand, within PP_0922at 1064.861 kb on - strand, within PP_0922at 1064.942 kb on - strandat 1064.942 kb on - strandat 1064.959 kb on - strandat 1065.172 kb on + strand, within PP_0923at 1065.176 kb on + strand, within PP_0923at 1065.176 kb on + strand, within PP_0923

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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1,063,044 + PP_0920 0.20 -0.5
1,063,044 + PP_0920 0.20 +1.0
1,063,045 - PP_0920 0.20 +1.0
1,063,045 - PP_0920 0.20 -1.9
1,063,152 + PP_0920 0.30 +0.4
1,063,152 + PP_0920 0.30 -2.3
1,063,152 + PP_0920 0.30 -0.2
1,063,152 + PP_0920 0.30 -0.1
1,063,153 - PP_0920 0.30 +0.5
1,063,153 - -0.1
1,063,153 - PP_0920 0.30 +0.0
1,063,153 - PP_0920 0.30 -0.6
1,063,153 - PP_0920 0.30 +1.2
1,063,153 - PP_0920 0.30 -0.1
1,063,153 - PP_0920 0.30 -0.4
1,063,153 - PP_0920 0.30 +0.3
1,063,223 + PP_0920 0.37 -3.2
1,063,223 + PP_0920 0.37 +0.7
1,063,425 + PP_0920 0.56 +0.6
1,063,479 + PP_0920 0.61 -3.0
1,063,480 - PP_0920 0.61 -0.6
1,063,561 - PP_0920 0.69 -0.1
1,063,576 + PP_0920 0.70 +0.4
1,063,576 + PP_0920 0.70 +1.0
1,063,577 - PP_0920 0.70 -0.6
1,063,577 - PP_0920 0.70 +0.5
1,063,655 + PP_0920 0.78 +1.4
1,063,655 + PP_0920 0.78 -1.0
1,063,655 + PP_0920 0.78 -0.8
1,063,685 - PP_0920 0.81 -3.5
1,063,758 - PP_0920 0.88 +0.3
1,063,758 - PP_0920 0.88 +1.1
1,063,758 - PP_0920 0.88 -0.8
1,063,761 + PP_0920 0.88 -2.0
1,063,761 + PP_0920 0.88 +0.8
1,063,761 + PP_0920 0.88 +0.8
1,063,762 - PP_0920 0.88 -2.6
1,063,764 + PP_0920 0.88 -1.6
1,063,764 + PP_0920 0.88 +0.7
1,063,764 + PP_0920 0.88 -1.2
1,063,765 - PP_0920 0.88 -0.2
1,063,765 - PP_0920 0.88 +1.0
1,063,835 - +0.3
1,063,835 - +0.8
1,063,835 - -0.0
1,063,835 - -1.2
1,063,895 + -2.6
1,063,942 + PP_0921 0.12 +1.0
1,063,942 + PP_0921 0.12 +0.6
1,063,942 + PP_0921 0.12 +0.1
1,063,942 + PP_0921 0.12 +1.7
1,063,943 - PP_0921 0.12 -0.1
1,063,943 - PP_0921 0.12 +2.1
1,063,943 - PP_0921 0.12 -1.5
1,064,183 - -1.1
1,064,272 - +0.4
1,064,273 + +0.6
1,064,280 - +1.1
1,064,311 + +0.2
1,064,322 - +0.4
1,064,347 + +1.5
1,064,348 - +0.6
1,064,366 - +0.5
1,064,366 - +0.5
1,064,366 - +1.0
1,064,366 - -0.1
1,064,422 + PP_0922 0.11 -0.1
1,064,423 - PP_0922 0.11 -1.2
1,064,509 + PP_0922 0.26 -3.8
1,064,510 - +0.9
1,064,510 - PP_0922 0.26 +2.0
1,064,632 + PP_0922 0.47 -2.1
1,064,632 + PP_0922 0.47 +0.7
1,064,633 - PP_0922 0.47 +0.5
1,064,672 - PP_0922 0.54 -2.3
1,064,758 + PP_0922 0.68 +1.1
1,064,759 - +2.2
1,064,860 + PP_0922 0.86 -3.5
1,064,860 + PP_0922 0.86 +0.4
1,064,860 + PP_0922 0.86 -3.2
1,064,860 + PP_0922 0.86 -0.4
1,064,861 - PP_0922 0.86 -3.1
1,064,861 - PP_0922 0.86 -2.4
1,064,942 - -2.7
1,064,942 - +0.8
1,064,959 - -1.6
1,065,172 + PP_0923 0.15 +0.1
1,065,176 + PP_0923 0.15 -1.7
1,065,176 + PP_0923 0.15 -3.1

Or see this region's nucleotide sequence