Strain Fitness in Pseudomonas putida KT2440 around PP_0147

Experiment: Growth at pH6 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0146 and PP_0147 are separated by 42 nucleotidesPP_0147 and PP_0148 are separated by 264 nucleotidesPP_0148 and PP_0149 are separated by 38 nucleotides PP_0146: PP_0146 - putative transport protein, at 155,578 to 156,375 _0146 PP_0147: PP_0147 - Citrate transporter, at 156,418 to 157,725 _0147 PP_0148: PP_0148 - conserved protein of unknown function, at 157,990 to 158,394 _0148 PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388 _0149 Position (kb) 156 157 158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 155.427 kb on - strandat 155.531 kb on - strandat 155.531 kb on - strandat 155.702 kb on + strand, within PP_0146at 155.702 kb on + strand, within PP_0146at 155.702 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.708 kb on + strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.709 kb on - strand, within PP_0146at 155.749 kb on + strand, within PP_0146at 155.749 kb on + strand, within PP_0146at 155.750 kb on - strand, within PP_0146at 155.754 kb on + strand, within PP_0146at 155.885 kb on - strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.966 kb on + strand, within PP_0146at 155.967 kb on - strand, within PP_0146at 155.967 kb on - strand, within PP_0146at 155.967 kb on - strandat 155.967 kb on - strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.001 kb on + strand, within PP_0146at 156.002 kb on - strand, within PP_0146at 156.032 kb on + strand, within PP_0146at 156.032 kb on + strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.033 kb on - strand, within PP_0146at 156.153 kb on + strand, within PP_0146at 156.153 kb on + strand, within PP_0146at 156.174 kb on + strand, within PP_0146at 156.175 kb on - strand, within PP_0146at 156.175 kb on - strand, within PP_0146at 156.300 kb on + strandat 156.351 kb on - strandat 156.355 kb on + strandat 156.368 kb on - strandat 156.408 kb on + strandat 156.409 kb on - strandat 156.416 kb on + strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.417 kb on - strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.419 kb on + strandat 156.420 kb on - strandat 156.420 kb on - strandat 156.426 kb on + strandat 156.427 kb on - strandat 156.469 kb on + strandat 156.469 kb on + strandat 156.470 kb on - strandat 156.470 kb on - strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.481 kb on + strandat 156.482 kb on - strandat 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.554 kb on + strand, within PP_0147at 156.555 kb on - strand, within PP_0147at 156.639 kb on - strand, within PP_0147at 156.677 kb on + strand, within PP_0147at 156.678 kb on - strand, within PP_0147at 156.680 kb on + strand, within PP_0147at 156.680 kb on + strand, within PP_0147at 156.681 kb on - strand, within PP_0147at 156.746 kb on + strand, within PP_0147at 156.747 kb on - strand, within PP_0147at 156.747 kb on - strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.868 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.920 kb on + strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 156.921 kb on - strand, within PP_0147at 157.028 kb on + strand, within PP_0147at 157.028 kb on + strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.172 kb on - strand, within PP_0147at 157.201 kb on + strand, within PP_0147at 157.223 kb on - strand, within PP_0147at 157.340 kb on + strandat 157.340 kb on + strand, within PP_0147at 157.340 kb on + strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.418 kb on - strand, within PP_0147at 157.520 kb on + strand, within PP_0147at 157.521 kb on - strand, within PP_0147at 157.577 kb on - strand, within PP_0147at 157.682 kb on + strandat 157.682 kb on + strandat 157.682 kb on + strandat 157.682 kb on + strandat 157.683 kb on - strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.732 kb on - strandat 157.817 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.922 kb on - strandat 157.936 kb on + strandat 157.936 kb on + strandat 157.936 kb on + strandat 157.987 kb on + strandat 157.987 kb on + strandat 157.988 kb on - strandat 158.004 kb on - strandat 158.004 kb on - strandat 158.175 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.203 kb on + strand, within PP_0148at 158.251 kb on - strand, within PP_0148at 158.304 kb on - strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.319 kb on + strandat 158.319 kb on + strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.393 kb on - strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) Trisodium citrate
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155,427 - +0.4
155,531 - +0.2
155,531 - +0.8
155,702 + PP_0146 0.16 +0.7
155,702 + PP_0146 0.16 +1.5
155,702 + PP_0146 0.16 +0.0
155,708 + PP_0146 0.16 -0.5
155,708 + PP_0146 0.16 -2.6
155,708 + PP_0146 0.16 +1.2
155,708 + PP_0146 0.16 +1.0
155,708 + PP_0146 0.16 -0.4
155,709 - PP_0146 0.16 +0.5
155,709 - PP_0146 0.16 -0.4
155,709 - PP_0146 0.16 -1.4
155,749 + PP_0146 0.21 +1.6
155,749 + PP_0146 0.21 +1.8
155,750 - PP_0146 0.22 -1.4
155,754 + PP_0146 0.22 +0.3
155,885 - PP_0146 0.38 +0.0
155,966 + PP_0146 0.49 +0.7
155,966 + PP_0146 0.49 +1.4
155,966 + PP_0146 0.49 -0.5
155,966 + PP_0146 0.49 +1.1
155,967 - PP_0146 0.49 +0.4
155,967 - PP_0146 0.49 +0.1
155,967 - +0.3
155,967 - PP_0146 0.49 +0.1
156,001 + PP_0146 0.53 +1.6
156,001 + PP_0146 0.53 +0.2
156,001 + PP_0146 0.53 +0.9
156,002 - PP_0146 0.53 -0.8
156,032 + PP_0146 0.57 +1.1
156,032 + PP_0146 0.57 +0.9
156,033 - PP_0146 0.57 -2.4
156,033 - PP_0146 0.57 -1.9
156,033 - PP_0146 0.57 +1.2
156,033 - PP_0146 0.57 -0.4
156,153 + PP_0146 0.72 -0.7
156,153 + PP_0146 0.72 -0.9
156,174 + PP_0146 0.75 +0.5
156,175 - PP_0146 0.75 -3.6
156,175 - PP_0146 0.75 -2.4
156,300 + +0.1
156,351 - +0.3
156,355 + +0.3
156,368 - +0.6
156,408 + -0.4
156,409 - +1.4
156,416 + -0.4
156,417 - -1.0
156,417 - -1.0
156,417 - -3.6
156,417 - -3.4
156,419 + +0.8
156,419 + +0.1
156,419 + +0.0
156,419 + +0.3
156,420 - -1.0
156,420 - +1.0
156,426 + -0.1
156,427 - -2.5
156,469 + -2.8
156,469 + +0.3
156,470 - -3.5
156,470 - -2.0
156,481 + -1.7
156,481 + -1.0
156,481 + -0.0
156,481 + -0.1
156,482 - -0.2
156,554 + PP_0147 0.10 -0.5
156,554 + PP_0147 0.10 -4.1
156,554 + PP_0147 0.10 -3.4
156,554 + PP_0147 0.10 +2.1
156,555 - PP_0147 0.10 +2.1
156,639 - PP_0147 0.17 -0.8
156,677 + PP_0147 0.20 -2.8
156,678 - PP_0147 0.20 -3.7
156,680 + PP_0147 0.20 -3.7
156,680 + PP_0147 0.20 -1.3
156,681 - PP_0147 0.20 -3.2
156,746 + PP_0147 0.25 +0.8
156,747 - PP_0147 0.25 -3.9
156,747 - PP_0147 0.25 -3.2
156,868 + PP_0147 0.34 -3.7
156,868 + PP_0147 0.34 -0.3
156,868 + PP_0147 0.34 +0.9
156,868 + PP_0147 0.34 -3.3
156,920 + PP_0147 0.38 -0.8
156,920 + PP_0147 0.38 -3.2
156,920 + PP_0147 0.38 -0.6
156,921 - PP_0147 0.38 -2.9
156,921 - PP_0147 0.38 -1.2
156,921 - PP_0147 0.38 -0.5
157,028 + PP_0147 0.47 -0.6
157,028 + PP_0147 0.47 -0.8
157,029 - PP_0147 0.47 -3.2
157,029 - PP_0147 0.47 +0.7
157,142 + PP_0147 0.55 -1.9
157,142 + PP_0147 0.55 -2.7
157,142 + PP_0147 0.55 -2.1
157,142 + PP_0147 0.55 -0.4
157,142 + PP_0147 0.55 -1.2
157,142 + PP_0147 0.55 -3.9
157,143 - PP_0147 0.55 -0.4
157,143 - PP_0147 0.55 -3.6
157,143 - PP_0147 0.55 -2.8
157,148 + PP_0147 0.56 -1.8
157,148 + PP_0147 0.56 -2.7
157,149 - PP_0147 0.56 -0.2
157,149 - PP_0147 0.56 +1.1
157,149 - PP_0147 0.56 -0.4
157,149 - PP_0147 0.56 -0.6
157,172 - PP_0147 0.58 -4.1
157,201 + PP_0147 0.60 -0.6
157,223 - PP_0147 0.62 -1.3
157,340 + -0.7
157,340 + PP_0147 0.70 -2.0
157,340 + PP_0147 0.70 -4.2
157,341 - PP_0147 0.71 -0.8
157,341 - PP_0147 0.71 -2.4
157,373 + PP_0147 0.73 -0.6
157,373 + PP_0147 0.73 -4.4
157,373 + PP_0147 0.73 -2.5
157,373 + PP_0147 0.73 -1.5
157,373 + PP_0147 0.73 -1.2
157,373 + PP_0147 0.73 -3.4
157,374 - PP_0147 0.73 -4.2
157,374 - PP_0147 0.73 +0.1
157,374 - PP_0147 0.73 -1.5
157,418 - PP_0147 0.76 -0.2
157,520 + PP_0147 0.84 -2.6
157,521 - PP_0147 0.84 -4.0
157,577 - PP_0147 0.89 -2.2
157,682 + -2.9
157,682 + -4.0
157,682 + -0.1
157,682 + -1.4
157,683 - -0.5
157,731 + +0.1
157,731 + -3.1
157,731 + -2.4
157,731 + -4.2
157,732 - -1.1
157,817 + -0.5
157,839 + -0.3
157,839 + -2.9
157,839 + -1.1
157,839 + -3.2
157,839 + -0.7
157,839 + -1.0
157,839 + -1.5
157,840 - -1.5
157,840 - -2.5
157,840 - -0.2
157,840 - -3.5
157,840 - -1.6
157,922 - +0.4
157,936 + -1.1
157,936 + -2.9
157,936 + -1.2
157,987 + -0.6
157,987 + -1.9
157,988 - +0.6
158,004 - +0.1
158,004 - +0.4
158,175 + PP_0148 0.46 +1.3
158,176 + PP_0148 0.46 -0.2
158,176 + PP_0148 0.46 -0.6
158,176 + PP_0148 0.46 -1.4
158,176 + PP_0148 0.46 +1.5
158,176 + PP_0148 0.46 -0.4
158,176 + PP_0148 0.46 -0.1
158,176 + PP_0148 0.46 +0.3
158,177 - PP_0148 0.46 +0.4
158,177 - PP_0148 0.46 +0.1
158,177 - PP_0148 0.46 -0.2
158,177 - PP_0148 0.46 -1.0
158,203 + PP_0148 0.53 +1.1
158,251 - PP_0148 0.64 -0.7
158,304 - PP_0148 0.78 -2.1
158,319 + PP_0148 0.81 +0.8
158,319 + +1.3
158,319 + PP_0148 0.81 -1.0
158,319 + PP_0148 0.81 -3.0
158,319 + PP_0148 0.81 +0.2
158,320 - PP_0148 0.81 -0.8
158,320 - PP_0148 0.81 +1.1
158,320 - PP_0148 0.81 -1.4
158,320 - PP_0148 0.81 +0.9
158,320 - PP_0148 0.81 +0.8
158,393 - +1.8
158,429 + +0.4
158,429 + -4.4
158,429 + +0.3
158,429 + +0.2
158,429 + +1.3
158,430 - -0.1
158,430 - +0.1
158,430 - -2.1
158,430 - -0.2
158,430 - -0.9
158,430 - +1.8
158,430 - -0.3
158,430 - +0.3
158,430 - +0.3
158,430 - -0.2
158,430 - -0.1

Or see this region's nucleotide sequence