Experiment: Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25820 and PS417_25825 are separated by 9 nucleotides PS417_25825 and PS417_25830 are separated by 284 nucleotides PS417_25830 and PS417_25835 are separated by 113 nucleotides
PS417_25820: PS417_25820 - diadenosine tetraphosphatase, at 5,575,140 to 5,575,991
_25820
PS417_25825: PS417_25825 - sulfurtransferase, at 5,576,001 to 5,576,330
_25825
PS417_25830: PS417_25830 - serine/threonine protein kinase, at 5,576,615 to 5,578,537
_25830
PS417_25835: PS417_25835 - hypothetical protein, at 5,578,651 to 5,579,922
_25835
Position (kb) 5576
5577
5578
5579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5575.934 kb on + strand at 5575.935 kb on - strand at 5575.965 kb on - strand at 5575.989 kb on + strand at 5576.018 kb on + strand at 5576.018 kb on + strand at 5576.091 kb on + strand, within PS417_25825 at 5576.193 kb on + strand, within PS417_25825 at 5576.256 kb on + strand, within PS417_25825 at 5576.257 kb on - strand, within PS417_25825 at 5576.257 kb on - strand, within PS417_25825 at 5576.257 kb on - strand, within PS417_25825 at 5576.402 kb on + strand at 5576.403 kb on - strand at 5576.440 kb on + strand at 5576.441 kb on - strand at 5576.441 kb on - strand at 5576.593 kb on + strand at 5576.620 kb on + strand at 5576.718 kb on - strand at 5576.718 kb on - strand at 5576.934 kb on - strand, within PS417_25830 at 5577.012 kb on - strand, within PS417_25830 at 5577.335 kb on + strand, within PS417_25830 at 5577.406 kb on + strand, within PS417_25830 at 5577.406 kb on + strand, within PS417_25830 at 5577.407 kb on - strand, within PS417_25830 at 5577.407 kb on - strand, within PS417_25830 at 5577.452 kb on + strand, within PS417_25830 at 5577.452 kb on + strand, within PS417_25830 at 5577.452 kb on + strand, within PS417_25830 at 5577.453 kb on - strand, within PS417_25830 at 5577.453 kb on - strand, within PS417_25830 at 5577.575 kb on + strand, within PS417_25830 at 5577.575 kb on + strand, within PS417_25830 at 5577.576 kb on - strand, within PS417_25830 at 5577.576 kb on - strand, within PS417_25830 at 5577.593 kb on + strand, within PS417_25830 at 5577.746 kb on + strand, within PS417_25830 at 5577.747 kb on - strand, within PS417_25830 at 5577.764 kb on + strand, within PS417_25830 at 5577.945 kb on - strand, within PS417_25830 at 5577.945 kb on - strand, within PS417_25830 at 5577.945 kb on - strand, within PS417_25830 at 5578.022 kb on + strand, within PS417_25830 at 5578.022 kb on + strand, within PS417_25830 at 5578.022 kb on + strand, within PS417_25830 at 5578.023 kb on - strand, within PS417_25830 at 5578.085 kb on + strand, within PS417_25830 at 5578.095 kb on - strand, within PS417_25830 at 5578.119 kb on - strand, within PS417_25830 at 5578.127 kb on + strand, within PS417_25830 at 5578.128 kb on - strand, within PS417_25830 at 5578.128 kb on - strand, within PS417_25830 at 5578.492 kb on - strand at 5578.511 kb on + strand at 5578.511 kb on + strand at 5578.511 kb on + strand at 5578.511 kb on + strand at 5578.525 kb on + strand at 5578.535 kb on + strand at 5578.595 kb on - strand at 5578.623 kb on + strand at 5578.624 kb on - strand at 5578.657 kb on + strand at 5578.657 kb on + strand at 5578.657 kb on + strand at 5578.658 kb on - strand at 5578.658 kb on - strand at 5578.911 kb on + strand, within PS417_25835 at 5578.991 kb on + strand, within PS417_25835 at 5579.065 kb on - strand, within PS417_25835 at 5579.175 kb on + strand, within PS417_25835 at 5579.176 kb on - strand, within PS417_25835 at 5579.176 kb on - strand, within PS417_25835 at 5579.176 kb on - strand, within PS417_25835 at 5579.176 kb on - strand, within PS417_25835 at 5579.351 kb on - strand, within PS417_25835 at 5579.351 kb on - strand, within PS417_25835 at 5579.494 kb on + strand, within PS417_25835 at 5579.494 kb on + strand, within PS417_25835 at 5579.495 kb on - strand, within PS417_25835
Per-strain Table
Position Strand Gene LocusTag Fraction Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,575,934 + -0.5 5,575,935 - +0.0 5,575,965 - +0.1 5,575,989 + -0.6 5,576,018 + +0.3 5,576,018 + -1.0 5,576,091 + PS417_25825 0.27 +1.6 5,576,193 + PS417_25825 0.58 -0.2 5,576,256 + PS417_25825 0.77 -0.6 5,576,257 - PS417_25825 0.78 -0.6 5,576,257 - PS417_25825 0.78 -1.3 5,576,257 - PS417_25825 0.78 +0.4 5,576,402 + -0.7 5,576,403 - +0.3 5,576,440 + -0.3 5,576,441 - -0.3 5,576,441 - +0.2 5,576,593 + -0.9 5,576,620 + -1.4 5,576,718 - -1.4 5,576,718 - -0.3 5,576,934 - PS417_25830 0.17 +0.5 5,577,012 - PS417_25830 0.21 -0.5 5,577,335 + PS417_25830 0.37 -1.3 5,577,406 + PS417_25830 0.41 +2.0 5,577,406 + PS417_25830 0.41 -0.2 5,577,407 - PS417_25830 0.41 -0.9 5,577,407 - PS417_25830 0.41 -1.3 5,577,452 + PS417_25830 0.44 -0.9 5,577,452 + PS417_25830 0.44 -0.9 5,577,452 + PS417_25830 0.44 -0.4 5,577,453 - PS417_25830 0.44 +0.3 5,577,453 - PS417_25830 0.44 +0.1 5,577,575 + PS417_25830 0.50 -0.9 5,577,575 + PS417_25830 0.50 -0.5 5,577,576 - PS417_25830 0.50 +0.1 5,577,576 - PS417_25830 0.50 -1.3 5,577,593 + PS417_25830 0.51 +0.1 5,577,746 + PS417_25830 0.59 -1.5 5,577,747 - PS417_25830 0.59 +0.5 5,577,764 + PS417_25830 0.60 -0.5 5,577,945 - PS417_25830 0.69 -1.7 5,577,945 - PS417_25830 0.69 +0.1 5,577,945 - PS417_25830 0.69 -0.6 5,578,022 + PS417_25830 0.73 -2.3 5,578,022 + PS417_25830 0.73 -0.8 5,578,022 + PS417_25830 0.73 -0.7 5,578,023 - PS417_25830 0.73 +0.1 5,578,085 + PS417_25830 0.76 -1.3 5,578,095 - PS417_25830 0.77 -0.8 5,578,119 - PS417_25830 0.78 -0.7 5,578,127 + PS417_25830 0.79 -1.3 5,578,128 - PS417_25830 0.79 -0.6 5,578,128 - PS417_25830 0.79 -1.1 5,578,492 - -0.9 5,578,511 + -1.3 5,578,511 + -0.2 5,578,511 + -1.9 5,578,511 + -0.5 5,578,525 + -1.2 5,578,535 + +1.4 5,578,595 - +0.1 5,578,623 + -0.9 5,578,624 - +0.3 5,578,657 + -2.2 5,578,657 + -2.0 5,578,657 + -1.6 5,578,658 - -0.6 5,578,658 - -1.2 5,578,911 + PS417_25835 0.20 -0.7 5,578,991 + PS417_25835 0.27 -0.9 5,579,065 - PS417_25835 0.33 -0.8 5,579,175 + PS417_25835 0.41 -1.5 5,579,176 - PS417_25835 0.41 +0.2 5,579,176 - PS417_25835 0.41 -1.7 5,579,176 - PS417_25835 0.41 -0.1 5,579,176 - PS417_25835 0.41 +0.1 5,579,351 - PS417_25835 0.55 +0.9 5,579,351 - PS417_25835 0.55 -0.9 5,579,494 + PS417_25835 0.66 -1.0 5,579,494 + PS417_25835 0.66 -1.0 5,579,495 - PS417_25835 0.66 +0.5
Or see this region's nucleotide sequence