Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00405 and PS417_00410 are separated by 269 nucleotides PS417_00410 and PS417_00415 are separated by 192 nucleotides PS417_00415 and PS417_00420 are separated by 34 nucleotides
PS417_00405: PS417_00405 - DNA polymerase I, at 77,978 to 80,755
_00405
PS417_00410: PS417_00410 - GTP-binding protein, at 81,025 to 81,666
_00410
PS417_00415: PS417_00415 - cytochrome, at 81,859 to 82,161
_00415
PS417_00420: PS417_00420 - cytochrome C, at 82,196 to 82,822
_00420
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.070 kb on + strand, within PS417_00405 at 80.330 kb on - strand, within PS417_00405 at 80.339 kb on + strand, within PS417_00405 at 80.339 kb on + strand, within PS417_00405 at 80.369 kb on + strand, within PS417_00405 at 80.370 kb on - strand, within PS417_00405 at 80.370 kb on - strand, within PS417_00405 at 80.408 kb on + strand, within PS417_00405 at 80.799 kb on - strand at 80.829 kb on + strand at 80.853 kb on + strand at 80.854 kb on - strand at 80.911 kb on + strand at 80.911 kb on + strand at 80.911 kb on + strand at 80.911 kb on + strand at 80.912 kb on - strand at 80.912 kb on - strand at 80.912 kb on - strand at 80.921 kb on + strand at 80.921 kb on + strand at 80.921 kb on + strand at 80.936 kb on - strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.740 kb on + strand at 81.742 kb on + strand at 81.809 kb on + strand at 81.809 kb on + strand at 81.937 kb on + strand, within PS417_00415 at 82.159 kb on + strand at 82.159 kb on + strand at 82.159 kb on + strand at 82.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 80,070 + PS417_00405 0.75 -0.5 80,330 - PS417_00405 0.85 -2.4 80,339 + PS417_00405 0.85 +0.7 80,339 + PS417_00405 0.85 -3.0 80,369 + PS417_00405 0.86 -0.1 80,370 - PS417_00405 0.86 -2.0 80,370 - PS417_00405 0.86 -0.3 80,408 + PS417_00405 0.87 +0.8 80,799 - +0.7 80,829 + -0.4 80,853 + +0.2 80,854 - -0.4 80,911 + -0.5 80,911 + -0.7 80,911 + +0.8 80,911 + +0.4 80,912 - +0.9 80,912 - +0.7 80,912 - -3.4 80,921 + -1.9 80,921 + +1.0 80,921 + +0.5 80,936 - +0.1 81,740 + +0.0 81,740 + -1.2 81,740 + -0.6 81,740 + -2.2 81,742 + -2.2 81,809 + +0.4 81,809 + +0.6 81,937 + PS417_00415 0.26 +1.1 82,159 + -0.9 82,159 + +0.0 82,159 + +0.8 82,166 + -3.2
Or see this region's nucleotide sequence