Strain Fitness in Pseudomonas simiae WCS417 around PS417_03665

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03655 and PS417_03660 overlap by 4 nucleotidesPS417_03660 and PS417_03665 overlap by 8 nucleotidesPS417_03665 and PS417_03670 are separated by 0 nucleotidesPS417_03670 and PS417_03675 are separated by 3 nucleotides PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163 _03655 PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582 _03660 PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020 _03665 PS417_03670: PS417_03670 - MerR family transcriptional regulator, at 831,021 to 831,950 _03670 PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913 _03675 Position (kb) 829 830 831 832Strain fitness (log2 ratio) -2 -1 0 1 2at 828.683 kb on - strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.709 kb on + strand, within PS417_03655at 828.815 kb on - strand, within PS417_03655at 829.016 kb on - strand, within PS417_03655at 829.218 kb on + strand, within PS417_03660at 829.218 kb on + strand, within PS417_03660at 829.219 kb on - strand, within PS417_03660at 829.242 kb on + strand, within PS417_03660at 829.243 kb on - strand, within PS417_03660at 829.258 kb on - strand, within PS417_03660at 829.422 kb on + strand, within PS417_03660at 829.422 kb on + strand, within PS417_03660at 829.422 kb on + strand, within PS417_03660at 829.438 kb on - strand, within PS417_03660at 829.825 kb on + strand, within PS417_03665at 829.826 kb on - strand, within PS417_03665at 829.826 kb on - strand, within PS417_03665at 830.167 kb on + strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.351 kb on - strand, within PS417_03665at 830.353 kb on + strand, within PS417_03665at 830.551 kb on + strand, within PS417_03665at 830.587 kb on + strand, within PS417_03665at 830.608 kb on - strand, within PS417_03665at 830.772 kb on + strand, within PS417_03665at 830.772 kb on + strand, within PS417_03665at 830.822 kb on + strand, within PS417_03665at 830.822 kb on + strand, within PS417_03665at 831.022 kb on + strandat 831.105 kb on + strandat 831.132 kb on + strand, within PS417_03670at 831.217 kb on + strand, within PS417_03670at 831.218 kb on - strand, within PS417_03670at 831.218 kb on - strand, within PS417_03670at 831.408 kb on - strand, within PS417_03670at 831.416 kb on - strand, within PS417_03670at 831.749 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.756 kb on + strand, within PS417_03670at 831.757 kb on - strand, within PS417_03670at 831.757 kb on - strand, within PS417_03670at 831.933 kb on + strandat 831.955 kb on + strandat 832.018 kb on + strandat 832.018 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
828,683 - PS417_03655 0.39 -1.9
828,709 + PS417_03655 0.42 +1.3
828,709 + PS417_03655 0.42 +1.6
828,709 + PS417_03655 0.42 +1.0
828,815 - PS417_03655 0.55 +0.5
829,016 - PS417_03655 0.81 +1.1
829,218 + PS417_03660 0.14 +0.2
829,218 + PS417_03660 0.14 -1.4
829,219 - PS417_03660 0.14 -0.7
829,242 + PS417_03660 0.19 +0.1
829,243 - PS417_03660 0.20 +1.3
829,258 - PS417_03660 0.23 +1.6
829,422 + PS417_03660 0.62 +1.1
829,422 + PS417_03660 0.62 +1.4
829,422 + PS417_03660 0.62 +1.5
829,438 - PS417_03660 0.66 -0.0
829,825 + PS417_03665 0.17 +1.4
829,826 - PS417_03665 0.17 -0.0
829,826 - PS417_03665 0.17 -0.3
830,167 + PS417_03665 0.41 -0.5
830,351 - PS417_03665 0.54 +0.8
830,351 - PS417_03665 0.54 -2.1
830,351 - PS417_03665 0.54 +0.6
830,351 - PS417_03665 0.54 -0.6
830,353 + PS417_03665 0.54 -0.8
830,551 + PS417_03665 0.67 -1.5
830,587 + PS417_03665 0.70 -0.8
830,608 - PS417_03665 0.71 -0.2
830,772 + PS417_03665 0.83 -0.0
830,772 + PS417_03665 0.83 +0.5
830,822 + PS417_03665 0.86 -0.7
830,822 + PS417_03665 0.86 +0.1
831,022 + +1.8
831,105 + -1.7
831,132 + PS417_03670 0.12 -0.8
831,217 + PS417_03670 0.21 -1.4
831,218 - PS417_03670 0.21 -1.6
831,218 - PS417_03670 0.21 -0.5
831,408 - PS417_03670 0.42 +0.1
831,416 - PS417_03670 0.42 -0.9
831,749 + PS417_03670 0.78 -1.8
831,756 + PS417_03670 0.79 -0.4
831,756 + PS417_03670 0.79 -1.0
831,756 + PS417_03670 0.79 -1.8
831,756 + PS417_03670 0.79 -1.4
831,757 - PS417_03670 0.79 -0.5
831,757 - PS417_03670 0.79 -0.8
831,933 + -1.1
831,955 + -0.5
832,018 + -1.2
832,018 + +0.1

Or see this region's nucleotide sequence