Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19800 and PS417_19805 overlap by 8 nucleotides PS417_19805 and PS417_19810 are separated by 16 nucleotides PS417_19810 and PS417_19815 are separated by 131 nucleotides
PS417_19800: PS417_19800 - flagellar motor switch protein FliG, at 4,298,448 to 4,299,467
_19800
PS417_19805: PS417_19805 - flagellar M-ring protein FliF, at 4,299,460 to 4,301,238
_19805
PS417_19810: PS417_19810 - flagellar hook-basal body protein FliE, at 4,301,255 to 4,301,584
_19810
PS417_19815: PS417_19815 - Fis family transcriptional regulator, at 4,301,716 to 4,303,092
_19815
Position (kb)
4299
4300
4301
4302 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 4299.220 kb on + strand at 4299.221 kb on - strand, within PS417_19800 at 4299.221 kb on - strand, within PS417_19800 at 4299.555 kb on - strand at 4299.800 kb on + strand, within PS417_19805 at 4300.702 kb on + strand, within PS417_19805 at 4301.244 kb on - strand at 4301.283 kb on + strand at 4301.303 kb on - strand, within PS417_19810 at 4301.303 kb on - strand, within PS417_19810 at 4301.634 kb on + strand at 4301.634 kb on + strand at 4301.635 kb on - strand at 4301.645 kb on + strand at 4301.718 kb on - strand at 4301.718 kb on - strand at 4301.728 kb on + strand at 4301.729 kb on - strand at 4301.729 kb on - strand at 4301.732 kb on + strand at 4301.732 kb on + strand at 4301.733 kb on - strand at 4301.733 kb on - strand at 4301.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,299,220 + -0.6 4,299,221 - PS417_19800 0.76 -5.5 4,299,221 - PS417_19800 0.76 -5.1 4,299,555 - -5.2 4,299,800 + PS417_19805 0.19 -4.0 4,300,702 + PS417_19805 0.70 -5.3 4,301,244 - -2.9 4,301,283 + -6.0 4,301,303 - PS417_19810 0.15 -3.2 4,301,303 - PS417_19810 0.15 -2.9 4,301,634 + -1.9 4,301,634 + -5.0 4,301,635 - -0.2 4,301,645 + -3.5 4,301,718 - -0.2 4,301,718 - -0.2 4,301,728 + -4.5 4,301,729 - -1.0 4,301,729 - -1.0 4,301,732 + -4.1 4,301,732 + -5.0 4,301,733 - +0.4 4,301,733 - +0.8 4,301,733 - +1.2
Or see this region's nucleotide sequence