Strain Fitness in Pseudomonas simiae WCS417 around PS417_19465

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19460 and PS417_19465 are separated by 166 nucleotidesPS417_19465 and PS417_19470 are separated by 3 nucleotidesPS417_19470 and PS417_19475 are separated by 96 nucleotides PS417_19460: PS417_19460 - septum formation inhibitor, at 4,220,114 to 4,220,851 _19460 PS417_19465: PS417_19465 - cell division inhibitor MinD, at 4,221,018 to 4,221,830 _19465 PS417_19470: PS417_19470 - cell division topological specificity factor, at 4,221,834 to 4,222,088 _19470 PS417_19475: PS417_19475 - pseudouridine synthase, at 4,222,185 to 4,222,820 _19475 Position (kb) 4221 4222Strain fitness (log2 ratio) -2 -1 0 1at 4220.029 kb on + strandat 4220.029 kb on + strandat 4220.073 kb on + strandat 4220.073 kb on + strandat 4220.073 kb on + strandat 4222.172 kb on - strandat 4222.212 kb on + strandat 4222.661 kb on + strand, within PS417_19475at 4222.661 kb on + strand, within PS417_19475at 4222.661 kb on + strand, within PS417_19475at 4222.661 kb on + strand, within PS417_19475at 4222.661 kb on + strand, within PS417_19475at 4222.662 kb on - strand, within PS417_19475at 4222.662 kb on - strand, within PS417_19475at 4222.662 kb on - strand, within PS417_19475at 4222.701 kb on + strand, within PS417_19475at 4222.701 kb on + strand, within PS417_19475at 4222.701 kb on + strand, within PS417_19475at 4222.702 kb on - strand, within PS417_19475at 4222.702 kb on - strand, within PS417_19475

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,220,029 + -0.1
4,220,029 + -0.5
4,220,073 + -0.1
4,220,073 + +0.6
4,220,073 + -0.1
4,222,172 - -0.3
4,222,212 + -1.1
4,222,661 + PS417_19475 0.75 -0.3
4,222,661 + PS417_19475 0.75 -1.1
4,222,661 + PS417_19475 0.75 -0.7
4,222,661 + PS417_19475 0.75 -0.8
4,222,661 + PS417_19475 0.75 -2.7
4,222,662 - PS417_19475 0.75 -0.1
4,222,662 - PS417_19475 0.75 -0.0
4,222,662 - PS417_19475 0.75 -0.6
4,222,701 + PS417_19475 0.81 -0.4
4,222,701 + PS417_19475 0.81 -2.1
4,222,701 + PS417_19475 0.81 -0.4
4,222,702 - PS417_19475 0.81 -0.8
4,222,702 - PS417_19475 0.81 -1.6

Or see this region's nucleotide sequence