Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01770 and PS417_01775 are separated by 153 nucleotides PS417_01775 and PS417_01780 are separated by 103 nucleotides
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770
_01775
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 393.982 kb on + strand, within PS417_01770 at 394.109 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.408 kb on - strand, within PS417_01770 at 394.666 kb on - strand at 394.754 kb on + strand at 394.755 kb on - strand at 394.844 kb on + strand at 394.935 kb on - strand, within PS417_01775 at 394.935 kb on - strand, within PS417_01775 at 395.025 kb on - strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.075 kb on - strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.077 kb on - strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.377 kb on - strand, within PS417_01775 at 395.471 kb on + strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.483 kb on + strand at 395.609 kb on + strand, within PS417_01775 at 395.726 kb on + strand at 395.739 kb on - strand at 395.778 kb on - strand at 395.806 kb on + strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.808 kb on + strand at 395.947 kb on - strand at 395.987 kb on - strand, within PS417_01780 at 396.357 kb on + strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 393,982 + PS417_01770 0.25 -2.0 394,109 + PS417_01770 0.38 +0.2 394,181 + PS417_01770 0.46 -0.2 394,181 + PS417_01770 0.46 -0.9 394,407 + PS417_01770 0.70 +1.0 394,407 + PS417_01770 0.70 -0.2 394,408 - PS417_01770 0.70 -2.4 394,666 - -0.4 394,754 + +0.2 394,755 - +0.7 394,844 + +0.7 394,935 - PS417_01775 0.10 -0.0 394,935 - PS417_01775 0.10 -0.0 395,025 - PS417_01775 0.20 -2.4 395,072 + PS417_01775 0.25 -0.8 395,072 + PS417_01775 0.25 +0.7 395,073 - PS417_01775 0.25 +1.6 395,073 - PS417_01775 0.25 +0.8 395,073 - PS417_01775 0.25 -0.9 395,073 - PS417_01775 0.25 -0.7 395,073 - PS417_01775 0.25 +2.2 395,073 - PS417_01775 0.25 +0.2 395,075 - PS417_01775 0.25 +0.9 395,076 + PS417_01775 0.25 -0.5 395,076 + PS417_01775 0.25 +0.9 395,077 - PS417_01775 0.25 -0.5 395,376 + PS417_01775 0.58 -0.1 395,376 + PS417_01775 0.58 -0.0 395,377 - PS417_01775 0.58 +0.2 395,471 + PS417_01775 0.68 +2.1 395,472 - PS417_01775 0.68 +0.5 395,472 - PS417_01775 0.68 -0.9 395,483 + -0.5 395,609 + PS417_01775 0.83 +0.7 395,726 + +0.8 395,739 - -0.2 395,778 - +0.7 395,806 + -4.6 395,807 - -0.4 395,807 - -0.1 395,807 - +0.3 395,807 - -0.1 395,808 + -0.3 395,947 - +0.7 395,987 - PS417_01780 0.12 -1.6 396,357 + PS417_01780 0.50 -2.0 396,358 - PS417_01780 0.50 +0.1 396,358 - PS417_01780 0.50 +0.7 396,570 + PS417_01780 0.72 +1.6 396,570 + PS417_01780 0.72 -0.9 396,570 + PS417_01780 0.72 -0.4 396,668 + PS417_01780 0.82 +1.8 396,669 - PS417_01780 0.82 +2.0
Or see this region's nucleotide sequence