Strain Fitness in Pseudomonas simiae WCS417 around PS417_11770

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11765 and PS417_11770 are separated by 26 nucleotidesPS417_11770 and PS417_11775 overlap by 4 nucleotides PS417_11765: PS417_11765 - ABC transporter substrate-binding protein, at 2,560,360 to 2,561,337 _11765 PS417_11770: PS417_11770 - pyruvate dehydrogenase, at 2,561,364 to 2,562,383 _11770 PS417_11775: PS417_11775 - acetoin dehydrogenase, at 2,562,380 to 2,563,474 _11775 Position (kb) 2561 2562 2563Strain fitness (log2 ratio) -1 0 1at 2560.399 kb on + strandat 2560.400 kb on - strandat 2560.621 kb on + strand, within PS417_11765at 2560.622 kb on - strand, within PS417_11765at 2560.641 kb on - strand, within PS417_11765at 2560.892 kb on - strand, within PS417_11765at 2561.075 kb on + strand, within PS417_11765at 2561.076 kb on - strand, within PS417_11765at 2561.116 kb on + strand, within PS417_11765at 2561.320 kb on + strandat 2561.339 kb on - strandat 2561.347 kb on + strandat 2561.347 kb on + strandat 2561.382 kb on + strandat 2561.444 kb on + strandat 2561.922 kb on + strand, within PS417_11770at 2561.922 kb on + strand, within PS417_11770at 2561.955 kb on + strand, within PS417_11770at 2561.955 kb on + strandat 2562.315 kb on + strandat 2562.316 kb on - strandat 2562.726 kb on + strand, within PS417_11775at 2562.958 kb on - strand, within PS417_11775at 2563.097 kb on + strand, within PS417_11775at 2563.098 kb on - strand, within PS417_11775

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,560,399 + +1.3
2,560,400 - -0.4
2,560,621 + PS417_11765 0.27 -0.4
2,560,622 - PS417_11765 0.27 +0.2
2,560,641 - PS417_11765 0.29 +0.8
2,560,892 - PS417_11765 0.54 -0.3
2,561,075 + PS417_11765 0.73 +0.8
2,561,076 - PS417_11765 0.73 +0.4
2,561,116 + PS417_11765 0.77 +0.0
2,561,320 + -0.1
2,561,339 - -0.2
2,561,347 + +0.7
2,561,347 + +0.2
2,561,382 + +0.0
2,561,444 + -0.1
2,561,922 + PS417_11770 0.55 -1.5
2,561,922 + PS417_11770 0.55 +0.2
2,561,955 + PS417_11770 0.58 -1.7
2,561,955 + -0.8
2,562,315 + +0.1
2,562,316 - -0.5
2,562,726 + PS417_11775 0.32 -0.8
2,562,958 - PS417_11775 0.53 -0.2
2,563,097 + PS417_11775 0.65 +0.7
2,563,098 - PS417_11775 0.66 -0.0

Or see this region's nucleotide sequence