Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01130 and PS417_01135 are separated by 128 nucleotides PS417_01135 and PS417_01140 are separated by 14 nucleotides PS417_01140 and PS417_01145 overlap by 4 nucleotides
PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703
_01130
PS417_01135: PS417_01135 - taurine dioxygenase, at 249,832 to 250,668
_01135
PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519
_01140
PS417_01145: PS417_01145 - taurine transporter ATP-binding subunit, at 251,516 to 252,295
_01145
Position (kb) 249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 248.861 kb on + strand, within PS417_01130 at 248.862 kb on - strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.254 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.691 kb on + strand at 249.692 kb on - strand at 249.692 kb on - strand at 249.809 kb on + strand at 249.810 kb on - strand at 249.841 kb on + strand at 249.842 kb on - strand at 249.842 kb on - strand at 249.842 kb on - strand at 250.053 kb on + strand, within PS417_01135 at 250.054 kb on - strand, within PS417_01135 at 250.268 kb on + strand, within PS417_01135 at 250.269 kb on - strand, within PS417_01135 at 250.426 kb on + strand, within PS417_01135 at 250.427 kb on - strand, within PS417_01135 at 250.454 kb on + strand, within PS417_01135 at 250.651 kb on - strand at 250.668 kb on + strand at 250.669 kb on - strand at 250.771 kb on - strand, within PS417_01140 at 250.771 kb on - strand, within PS417_01140 at 251.146 kb on + strand, within PS417_01140 at 251.623 kb on - strand, within PS417_01145
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 248,861 + PS417_01130 0.19 -1.7 248,862 - PS417_01130 0.19 +0.4 249,011 + PS417_01130 0.33 -0.0 249,011 + PS417_01130 0.33 +0.5 249,011 + PS417_01130 0.33 -0.5 249,254 + PS417_01130 0.57 +0.0 249,365 + PS417_01130 0.67 -0.4 249,365 + PS417_01130 0.67 +2.0 249,691 + -0.3 249,692 - +1.0 249,692 - -1.3 249,809 + +0.5 249,810 - +2.0 249,841 + +0.5 249,842 - +1.6 249,842 - +0.6 249,842 - +0.9 250,053 + PS417_01135 0.26 +0.9 250,054 - PS417_01135 0.27 +2.5 250,268 + PS417_01135 0.52 -2.5 250,269 - PS417_01135 0.52 -1.1 250,426 + PS417_01135 0.71 +0.7 250,427 - PS417_01135 0.71 +1.8 250,454 + PS417_01135 0.74 +1.6 250,651 - -0.9 250,668 + +1.9 250,669 - +1.1 250,771 - PS417_01140 0.11 -0.5 250,771 - PS417_01140 0.11 +1.8 251,146 + PS417_01140 0.55 +0.5 251,623 - PS417_01145 0.14 +0.8
Or see this region's nucleotide sequence