Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11160 and PS417_11165 are separated by 12 nucleotides PS417_11165 and PS417_11170 overlap by 4 nucleotides
PS417_11160: PS417_11160 - 6-aminohexanoate hydrolase, at 2,392,969 to 2,394,474
_11160
PS417_11165: PS417_11165 - omega amino acid--pyruvate aminotransferase, at 2,394,487 to 2,395,782
_11165
PS417_11170: PS417_11170 - aldehyde dehydrogenase, at 2,395,779 to 2,397,200
_11170
Position (kb)
2394
2395
2396 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2394.250 kb on + strand, within PS417_11160 at 2394.266 kb on - strand, within PS417_11160 at 2394.323 kb on + strand, within PS417_11160 at 2394.324 kb on - strand at 2394.328 kb on - strand at 2394.328 kb on - strand at 2394.328 kb on - strand at 2394.328 kb on - strand at 2394.575 kb on - strand at 2395.163 kb on - strand, within PS417_11165 at 2395.418 kb on - strand, within PS417_11165 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.136 kb on + strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.137 kb on - strand, within PS417_11170 at 2396.148 kb on + strand, within PS417_11170 at 2396.149 kb on - strand, within PS417_11170
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,394,250 + PS417_11160 0.85 +0.3 2,394,266 - PS417_11160 0.86 +1.1 2,394,323 + PS417_11160 0.90 +0.5 2,394,324 - +0.3 2,394,328 - +0.1 2,394,328 - -1.8 2,394,328 - +1.5 2,394,328 - +0.2 2,394,575 - -0.0 2,395,163 - PS417_11165 0.52 +0.1 2,395,418 - PS417_11165 0.72 +0.3 2,396,136 + PS417_11170 0.25 -0.8 2,396,136 + PS417_11170 0.25 -3.0 2,396,136 + PS417_11170 0.25 -0.9 2,396,136 + PS417_11170 0.25 -0.3 2,396,137 - PS417_11170 0.25 +0.6 2,396,137 - PS417_11170 0.25 +0.3 2,396,137 - PS417_11170 0.25 -1.2 2,396,148 + PS417_11170 0.26 -0.5 2,396,149 - PS417_11170 0.26 +0.0
Or see this region's nucleotide sequence