Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07535 and PS417_07540 are separated by 53 nucleotides PS417_07540 and PS417_07545 are separated by 267 nucleotides
PS417_07535: PS417_07535 - erythronate-4-phosphate dehydrogenase, at 1,657,268 to 1,658,410
_07535
PS417_07540: PS417_07540 - multifunctional fatty acid oxidation complex subunit alpha, at 1,658,464 to 1,658,637
_07540
PS417_07545: PS417_07545 - ABC transporter ATP-binding protein, at 1,658,905 to 1,660,680
_07545
Position (kb)
1658
1659 Strain fitness (log2 ratio)
-2
-1
0
1 at 1658.566 kb on - strand, within PS417_07540 at 1658.567 kb on + strand, within PS417_07540 at 1658.567 kb on + strand, within PS417_07540 at 1658.568 kb on - strand, within PS417_07540 at 1658.663 kb on - strand at 1658.663 kb on - strand at 1658.666 kb on + strand at 1658.666 kb on + strand at 1658.666 kb on + strand at 1658.667 kb on - strand at 1658.667 kb on - strand at 1658.667 kb on - strand at 1658.675 kb on + strand at 1658.678 kb on + strand at 1658.678 kb on + strand at 1658.678 kb on + strand at 1658.708 kb on + strand at 1658.709 kb on - strand at 1658.709 kb on - strand at 1658.797 kb on - strand at 1658.819 kb on - strand at 1658.819 kb on - strand at 1658.839 kb on - strand at 1658.839 kb on - strand at 1658.870 kb on - strand at 1658.870 kb on - strand at 1658.877 kb on + strand at 1658.877 kb on + strand at 1658.877 kb on + strand at 1658.877 kb on + strand at 1658.877 kb on + strand at 1658.878 kb on - strand at 1658.878 kb on - strand at 1658.963 kb on - strand at 1659.016 kb on - strand at 1659.016 kb on - strand at 1659.155 kb on - strand, within PS417_07545 at 1659.155 kb on - strand, within PS417_07545 at 1659.241 kb on + strand at 1659.308 kb on + strand at 1659.339 kb on + strand, within PS417_07545 at 1659.461 kb on + strand, within PS417_07545 at 1659.462 kb on - strand, within PS417_07545 at 1659.511 kb on + strand, within PS417_07545 at 1659.511 kb on + strand, within PS417_07545 at 1659.511 kb on + strand, within PS417_07545 at 1659.511 kb on + strand, within PS417_07545 at 1659.512 kb on - strand, within PS417_07545 at 1659.512 kb on - strand, within PS417_07545 at 1659.553 kb on + strand, within PS417_07545 at 1659.554 kb on - strand, within PS417_07545 at 1659.554 kb on - strand, within PS417_07545
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,658,566 - PS417_07540 0.59 +0.3 1,658,567 + PS417_07540 0.59 -0.0 1,658,567 + PS417_07540 0.59 +0.9 1,658,568 - PS417_07540 0.60 +1.5 1,658,663 - +0.5 1,658,663 - +0.0 1,658,666 + +0.1 1,658,666 + +0.8 1,658,666 + -1.3 1,658,667 - -0.3 1,658,667 - -0.2 1,658,667 - +0.3 1,658,675 + +1.3 1,658,678 + -1.3 1,658,678 + +0.7 1,658,678 + -0.2 1,658,708 + +0.6 1,658,709 - -0.4 1,658,709 - -0.6 1,658,797 - +0.6 1,658,819 - -0.3 1,658,819 - -0.1 1,658,839 - -1.5 1,658,839 - -0.7 1,658,870 - -0.1 1,658,870 - -0.5 1,658,877 + -1.1 1,658,877 + -0.2 1,658,877 + -1.8 1,658,877 + -1.0 1,658,877 + -0.1 1,658,878 - +0.4 1,658,878 - +0.6 1,658,963 - +0.1 1,659,016 - -0.4 1,659,016 - -1.8 1,659,155 - PS417_07545 0.14 -0.7 1,659,155 - PS417_07545 0.14 +0.0 1,659,241 + -0.4 1,659,308 + -0.4 1,659,339 + PS417_07545 0.24 -0.0 1,659,461 + PS417_07545 0.31 -1.9 1,659,462 - PS417_07545 0.31 -0.4 1,659,511 + PS417_07545 0.34 -1.9 1,659,511 + PS417_07545 0.34 +1.4 1,659,511 + PS417_07545 0.34 +0.8 1,659,511 + PS417_07545 0.34 +0.6 1,659,512 - PS417_07545 0.34 +1.1 1,659,512 - PS417_07545 0.34 -1.6 1,659,553 + PS417_07545 0.36 +0.6 1,659,554 - PS417_07545 0.37 +0.7 1,659,554 - PS417_07545 0.37 +0.1
Or see this region's nucleotide sequence