Strain Fitness in Pseudomonas putida KT2440 around PP_4843

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4842 and PP_4843 overlap by 1 nucleotidesPP_4843 and PP_4844 overlap by 4 nucleotides PP_4842: PP_4842 - putative Urea ABC transporter, at 5,509,802 to 5,511,289 _4842 PP_4843: PP_4843 - putative Urea ABC transporter, permease protein, at 5,511,289 to 5,512,368 _4843 PP_4844: PP_4844 - putative Urea ABC transporter, ATP-binding protein, at 5,512,365 to 5,513,222 _4844 Position (kb) 5511 5512 5513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5510.325 kb on + strand, within PP_4842at 5510.528 kb on + strandat 5510.537 kb on + strand, within PP_4842at 5510.537 kb on + strand, within PP_4842at 5510.537 kb on + strand, within PP_4842at 5510.537 kb on + strandat 5510.538 kb on - strand, within PP_4842at 5510.538 kb on - strand, within PP_4842at 5510.538 kb on - strand, within PP_4842at 5510.538 kb on - strand, within PP_4842at 5510.550 kb on + strand, within PP_4842at 5510.550 kb on + strand, within PP_4842at 5510.551 kb on - strand, within PP_4842at 5510.551 kb on - strand, within PP_4842at 5510.589 kb on - strand, within PP_4842at 5510.828 kb on + strand, within PP_4842at 5510.829 kb on - strand, within PP_4842at 5510.875 kb on + strand, within PP_4842at 5510.875 kb on + strand, within PP_4842at 5510.875 kb on + strand, within PP_4842at 5510.875 kb on + strand, within PP_4842at 5510.876 kb on - strand, within PP_4842at 5510.876 kb on - strand, within PP_4842at 5511.033 kb on + strand, within PP_4842at 5511.074 kb on + strand, within PP_4842at 5511.074 kb on + strand, within PP_4842at 5511.074 kb on + strand, within PP_4842at 5511.074 kb on + strand, within PP_4842at 5511.074 kb on + strand, within PP_4842at 5511.316 kb on - strandat 5511.316 kb on - strandat 5511.316 kb on - strandat 5511.433 kb on + strand, within PP_4843at 5511.434 kb on - strand, within PP_4843at 5511.434 kb on - strand, within PP_4843at 5511.466 kb on + strand, within PP_4843at 5511.571 kb on + strand, within PP_4843at 5511.571 kb on + strand, within PP_4843at 5511.571 kb on + strandat 5511.572 kb on - strand, within PP_4843at 5511.647 kb on - strand, within PP_4843at 5511.760 kb on + strand, within PP_4843at 5511.761 kb on - strand, within PP_4843at 5511.946 kb on + strand, within PP_4843at 5511.946 kb on + strand, within PP_4843at 5512.033 kb on + strand, within PP_4843at 5512.034 kb on - strand, within PP_4843at 5512.106 kb on - strand, within PP_4843at 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.318 kb on + strandat 5512.560 kb on + strand, within PP_4844at 5512.561 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.631 kb on - strand, within PP_4844at 5512.668 kb on + strand, within PP_4844at 5512.669 kb on - strand, within PP_4844at 5512.707 kb on + strand, within PP_4844at 5513.208 kb on + strandat 5513.209 kb on - strandat 5513.209 kb on - strandat 5513.277 kb on + strandat 5513.277 kb on + strandat 5513.278 kb on - strandat 5513.278 kb on - strandat 5513.288 kb on + strandat 5513.288 kb on + strandat 5513.289 kb on - strandat 5513.314 kb on - strandat 5513.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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5,510,325 + PP_4842 0.35 -0.8
5,510,528 + -0.2
5,510,537 + PP_4842 0.49 -0.1
5,510,537 + PP_4842 0.49 -2.4
5,510,537 + PP_4842 0.49 +1.1
5,510,537 + +0.5
5,510,538 - PP_4842 0.49 +1.2
5,510,538 - PP_4842 0.49 -1.1
5,510,538 - PP_4842 0.49 -1.2
5,510,538 - PP_4842 0.49 +0.0
5,510,550 + PP_4842 0.50 +0.8
5,510,550 + PP_4842 0.50 +1.5
5,510,551 - PP_4842 0.50 -0.5
5,510,551 - PP_4842 0.50 -0.3
5,510,589 - PP_4842 0.53 -4.0
5,510,828 + PP_4842 0.69 +0.3
5,510,829 - PP_4842 0.69 +1.1
5,510,875 + PP_4842 0.72 +0.4
5,510,875 + PP_4842 0.72 +1.4
5,510,875 + PP_4842 0.72 +0.7
5,510,875 + PP_4842 0.72 +0.9
5,510,876 - PP_4842 0.72 +0.6
5,510,876 - PP_4842 0.72 -3.5
5,511,033 + PP_4842 0.83 +1.1
5,511,074 + PP_4842 0.85 -1.6
5,511,074 + PP_4842 0.85 -0.4
5,511,074 + PP_4842 0.85 +0.5
5,511,074 + PP_4842 0.85 +0.6
5,511,074 + PP_4842 0.85 -0.1
5,511,316 - +1.6
5,511,316 - +0.8
5,511,316 - +1.5
5,511,433 + PP_4843 0.13 +0.6
5,511,434 - PP_4843 0.13 +1.2
5,511,434 - PP_4843 0.13 +1.0
5,511,466 + PP_4843 0.16 +0.4
5,511,571 + PP_4843 0.26 +1.5
5,511,571 + PP_4843 0.26 -1.1
5,511,571 + -1.0
5,511,572 - PP_4843 0.26 -1.0
5,511,647 - PP_4843 0.33 +2.1
5,511,760 + PP_4843 0.44 -2.0
5,511,761 - PP_4843 0.44 +1.6
5,511,946 + PP_4843 0.61 +1.0
5,511,946 + PP_4843 0.61 +0.2
5,512,033 + PP_4843 0.69 -2.9
5,512,034 - PP_4843 0.69 -1.4
5,512,106 - PP_4843 0.76 -2.3
5,512,318 + +0.9
5,512,318 + -0.2
5,512,318 + +0.0
5,512,318 + +0.4
5,512,560 + PP_4844 0.23 +0.3
5,512,561 - PP_4844 0.23 -0.5
5,512,631 - PP_4844 0.31 +0.3
5,512,631 - PP_4844 0.31 -0.3
5,512,631 - PP_4844 0.31 +0.7
5,512,668 + PP_4844 0.35 -2.0
5,512,669 - PP_4844 0.35 +0.9
5,512,707 + PP_4844 0.40 +0.3
5,513,208 + -0.1
5,513,209 - -0.2
5,513,209 - +0.8
5,513,277 + -1.6
5,513,277 + +0.4
5,513,278 - +1.7
5,513,278 - -1.1
5,513,288 + +0.4
5,513,288 + +1.5
5,513,289 - -0.2
5,513,314 - +0.4
5,513,325 + -0.5

Or see this region's nucleotide sequence