Experiment: Growth at pH9 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3881 and PP_3882 overlap by 41 nucleotides PP_3882 and PP_3883 are separated by 135 nucleotides PP_3883 and PP_3884 are separated by 3 nucleotides PP_3884 and PP_5641 are separated by 158 nucleotides
PP_3881: PP_3881 - putative Phage terminase, large subunit, at 4,401,345 to 4,403,153
_3881
PP_3882: PP_3882 - putative Phage terminase, small subunit, at 4,403,113 to 4,403,580
_3882
PP_3883: PP_3883 - putative Phage holin, at 4,403,716 to 4,404,036
_3883
PP_3884: PP_3884 - Phage holin, lambda family, at 4,404,040 to 4,404,363
_3884
PP_5641: PP_5641 - conserved protein of unknown function, at 4,404,522 to 4,405,151
_5641
Position (kb) 4403
4404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4402.216 kb on + strand, within PP_3881 at 4402.216 kb on + strand, within PP_3881 at 4402.217 kb on - strand, within PP_3881 at 4402.314 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.316 kb on + strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.317 kb on - strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.318 kb on + strand, within PP_3881 at 4402.319 kb on - strand, within PP_3881 at 4402.319 kb on - strand, within PP_3881 at 4402.369 kb on + strand, within PP_3881 at 4402.588 kb on + strand, within PP_3881 at 4402.588 kb on + strand, within PP_3881 at 4402.720 kb on + strand, within PP_3881 at 4402.720 kb on + strand, within PP_3881 at 4402.720 kb on + strand, within PP_3881 at 4402.721 kb on - strand, within PP_3881 at 4402.721 kb on - strand, within PP_3881 at 4402.817 kb on - strand, within PP_3881 at 4402.961 kb on + strand, within PP_3881 at 4402.961 kb on + strand, within PP_3881 at 4402.961 kb on + strand, within PP_3881 at 4402.961 kb on + strand, within PP_3881 at 4402.962 kb on - strand, within PP_3881 at 4403.161 kb on + strand, within PP_3882 at 4403.231 kb on - strand, within PP_3882 at 4403.231 kb on - strand, within PP_3882 at 4403.300 kb on + strand, within PP_3882 at 4403.301 kb on - strand, within PP_3882 at 4403.352 kb on - strand, within PP_3882 at 4403.487 kb on + strand, within PP_3882 at 4403.488 kb on - strand, within PP_3882 at 4403.727 kb on + strand at 4403.763 kb on + strand, within PP_3883 at 4404.000 kb on - strand, within PP_3883 at 4404.000 kb on - strand, within PP_3883 at 4404.094 kb on + strand, within PP_3884 at 4404.095 kb on - strand, within PP_3884 at 4404.240 kb on - strand, within PP_3884 at 4404.285 kb on - strand, within PP_3884 at 4404.453 kb on + strand at 4404.478 kb on + strand at 4404.478 kb on + strand at 4404.478 kb on + strand at 4404.478 kb on + strand at 4404.480 kb on + strand at 4404.480 kb on + strand at 4404.480 kb on + strand at 4404.481 kb on - strand at 4404.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate remove 4,402,216 + PP_3881 0.48 +0.2 4,402,216 + PP_3881 0.48 +2.2 4,402,217 - PP_3881 0.48 -0.0 4,402,314 + PP_3881 0.54 +1.4 4,402,316 + PP_3881 0.54 +1.1 4,402,316 + PP_3881 0.54 +0.6 4,402,316 + PP_3881 0.54 +1.5 4,402,316 + PP_3881 0.54 +1.4 4,402,317 - PP_3881 0.54 +0.0 4,402,317 - PP_3881 0.54 +0.2 4,402,317 - PP_3881 0.54 -1.6 4,402,318 + PP_3881 0.54 +1.4 4,402,318 + PP_3881 0.54 +0.5 4,402,318 + PP_3881 0.54 +0.1 4,402,318 + PP_3881 0.54 +0.4 4,402,318 + PP_3881 0.54 -1.4 4,402,318 + PP_3881 0.54 -1.1 4,402,319 - PP_3881 0.54 +0.0 4,402,319 - PP_3881 0.54 -0.1 4,402,369 + PP_3881 0.57 -0.4 4,402,588 + PP_3881 0.69 -1.0 4,402,588 + PP_3881 0.69 -0.9 4,402,720 + PP_3881 0.76 +1.1 4,402,720 + PP_3881 0.76 -0.7 4,402,720 + PP_3881 0.76 +0.7 4,402,721 - PP_3881 0.76 -1.3 4,402,721 - PP_3881 0.76 -0.8 4,402,817 - PP_3881 0.81 +0.1 4,402,961 + PP_3881 0.89 +0.2 4,402,961 + PP_3881 0.89 -0.3 4,402,961 + PP_3881 0.89 +1.1 4,402,961 + PP_3881 0.89 -0.8 4,402,962 - PP_3881 0.89 -1.6 4,403,161 + PP_3882 0.10 +0.3 4,403,231 - PP_3882 0.25 +0.8 4,403,231 - PP_3882 0.25 -1.3 4,403,300 + PP_3882 0.40 +0.5 4,403,301 - PP_3882 0.40 +2.1 4,403,352 - PP_3882 0.51 +0.6 4,403,487 + PP_3882 0.80 +1.0 4,403,488 - PP_3882 0.80 -0.2 4,403,727 + -0.6 4,403,763 + PP_3883 0.15 -0.4 4,404,000 - PP_3883 0.88 -0.1 4,404,000 - PP_3883 0.88 +0.6 4,404,094 + PP_3884 0.17 +0.7 4,404,095 - PP_3884 0.17 +0.3 4,404,240 - PP_3884 0.62 -0.8 4,404,285 - PP_3884 0.76 +0.2 4,404,453 + +0.8 4,404,478 + +0.5 4,404,478 + +1.1 4,404,478 + -1.2 4,404,478 + +1.2 4,404,480 + +0.1 4,404,480 + -0.9 4,404,480 + -1.1 4,404,481 - +0.8 4,404,489 - -2.2
Or see this region's nucleotide sequence