Strain Fitness in Pseudomonas putida KT2440 around PP_2695

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2694 and PP_2695 are separated by 86 nucleotidesPP_2695 and PP_2696 are separated by 66 nucleotides PP_2694: PP_2694 - Aldehyde dehydrogenase family protein, at 3,085,123 to 3,086,565 _2694 PP_2695: PP_2695 - Transcriptional regulator, LysR family, at 3,086,652 to 3,087,548 _2695 PP_2696: PP_2696 - DNA-binding transcriptional regulator, homocysteine-binding, at 3,087,615 to 3,088,544 _2696 Position (kb) 3086 3087 3088Strain fitness (log2 ratio) -2 -1 0 1 2at 3086.124 kb on + strand, within PP_2694at 3086.134 kb on + strand, within PP_2694at 3086.228 kb on + strand, within PP_2694at 3086.232 kb on - strand, within PP_2694at 3086.495 kb on + strandat 3086.495 kb on + strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.496 kb on - strandat 3086.540 kb on + strandat 3086.540 kb on + strandat 3086.540 kb on + strandat 3086.541 kb on - strandat 3086.541 kb on - strandat 3086.549 kb on + strandat 3086.550 kb on - strandat 3086.550 kb on - strandat 3086.656 kb on + strandat 3086.701 kb on + strandat 3086.836 kb on + strand, within PP_2695at 3087.374 kb on + strand, within PP_2695at 3087.374 kb on + strand, within PP_2695at 3087.375 kb on - strand, within PP_2695at 3087.375 kb on - strand, within PP_2695at 3087.384 kb on + strand, within PP_2695at 3087.586 kb on - strandat 3087.700 kb on + strandat 3087.701 kb on - strandat 3087.737 kb on - strand, within PP_2696at 3087.737 kb on - strand, within PP_2696at 3087.781 kb on - strand, within PP_2696at 3087.781 kb on - strand, within PP_2696at 3087.781 kb on - strand, within PP_2696at 3087.784 kb on + strand, within PP_2696at 3087.799 kb on + strand, within PP_2696at 3087.800 kb on - strand, within PP_2696at 3087.884 kb on + strand, within PP_2696at 3087.884 kb on + strand, within PP_2696at 3087.885 kb on - strand, within PP_2696at 3087.885 kb on - strand, within PP_2696at 3087.888 kb on + strand, within PP_2696at 3087.888 kb on + strand, within PP_2696at 3087.889 kb on - strand, within PP_2696at 3087.962 kb on - strand, within PP_2696at 3088.072 kb on + strand, within PP_2696at 3088.072 kb on + strand, within PP_2696at 3088.072 kb on + strand, within PP_2696at 3088.073 kb on - strand, within PP_2696at 3088.073 kb on - strand, within PP_2696at 3088.073 kb on - strand, within PP_2696at 3088.235 kb on - strand, within PP_2696at 3088.235 kb on - strand, within PP_2696at 3088.310 kb on + strand, within PP_2696at 3088.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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3,086,124 + PP_2694 0.69 +0.4
3,086,134 + PP_2694 0.70 -0.0
3,086,228 + PP_2694 0.77 +1.0
3,086,232 - PP_2694 0.77 -0.5
3,086,495 + +0.2
3,086,495 + +0.1
3,086,496 - -0.8
3,086,496 - -0.3
3,086,496 - +0.9
3,086,496 - -0.5
3,086,496 - -0.5
3,086,496 - -0.1
3,086,496 - +0.5
3,086,540 + +0.4
3,086,540 + +0.9
3,086,540 + +0.2
3,086,541 - +0.3
3,086,541 - +1.7
3,086,549 + -0.2
3,086,550 - -0.9
3,086,550 - +0.5
3,086,656 + -2.0
3,086,701 + +1.2
3,086,836 + PP_2695 0.21 -0.4
3,087,374 + PP_2695 0.80 -0.0
3,087,374 + PP_2695 0.80 +0.3
3,087,375 - PP_2695 0.81 +0.6
3,087,375 - PP_2695 0.81 +1.9
3,087,384 + PP_2695 0.82 +1.5
3,087,586 - +0.6
3,087,700 + +2.4
3,087,701 - -0.5
3,087,737 - PP_2696 0.13 +0.8
3,087,737 - PP_2696 0.13 +0.6
3,087,781 - PP_2696 0.18 +0.3
3,087,781 - PP_2696 0.18 -2.0
3,087,781 - PP_2696 0.18 -0.0
3,087,784 + PP_2696 0.18 +0.2
3,087,799 + PP_2696 0.20 +0.5
3,087,800 - PP_2696 0.20 +0.8
3,087,884 + PP_2696 0.29 -0.7
3,087,884 + PP_2696 0.29 -0.0
3,087,885 - PP_2696 0.29 -1.5
3,087,885 - PP_2696 0.29 -0.2
3,087,888 + PP_2696 0.29 +0.5
3,087,888 + PP_2696 0.29 -0.2
3,087,889 - PP_2696 0.29 -0.8
3,087,962 - PP_2696 0.37 -1.2
3,088,072 + PP_2696 0.49 +1.2
3,088,072 + PP_2696 0.49 +0.4
3,088,072 + PP_2696 0.49 +0.8
3,088,073 - PP_2696 0.49 +0.6
3,088,073 - PP_2696 0.49 -0.2
3,088,073 - PP_2696 0.49 +0.7
3,088,235 - PP_2696 0.67 +2.0
3,088,235 - PP_2696 0.67 -2.1
3,088,310 + PP_2696 0.75 +0.5
3,088,533 + +0.7

Or see this region's nucleotide sequence