Strain Fitness in Pseudomonas putida KT2440 around PP_1416

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1415 and PP_1416 overlap by 8 nucleotidesPP_1416 and PP_1417 are separated by 1 nucleotidesPP_1417 and PP_1418 are separated by 172 nucleotides PP_1415: PP_1415 - putative membrane associated enzyme subunit, at 1,614,696 to 1,615,751 _1415 PP_1416: PP_1416 - putative Tricarboxylate transport protein TctA, at 1,615,744 to 1,617,258 _1416 PP_1417: PP_1417 - putative Tricarboxylate transport protein TctB, at 1,617,260 to 1,617,745 _1417 PP_1418: PP_1418 - putative Tricarboxylate transport protein TctC, at 1,617,918 to 1,618,898 _1418 Position (kb) 1615 1616 1617 1618Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1615.443 kb on + strand, within PP_1415at 1615.443 kb on + strand, within PP_1415at 1615.443 kb on + strandat 1615.443 kb on + strand, within PP_1415at 1615.444 kb on - strand, within PP_1415at 1615.817 kb on - strandat 1615.822 kb on + strandat 1615.982 kb on + strand, within PP_1416at 1615.983 kb on - strand, within PP_1416at 1616.025 kb on + strand, within PP_1416at 1616.026 kb on - strand, within PP_1416at 1616.143 kb on + strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.144 kb on - strand, within PP_1416at 1616.193 kb on + strandat 1616.193 kb on + strand, within PP_1416at 1616.193 kb on + strand, within PP_1416at 1616.193 kb on + strand, within PP_1416at 1616.194 kb on - strand, within PP_1416at 1616.238 kb on - strand, within PP_1416at 1616.417 kb on + strand, within PP_1416at 1616.417 kb on + strand, within PP_1416at 1616.418 kb on - strand, within PP_1416at 1616.538 kb on + strand, within PP_1416at 1616.538 kb on + strand, within PP_1416at 1616.813 kb on + strand, within PP_1416at 1616.814 kb on - strand, within PP_1416at 1616.814 kb on - strand, within PP_1416at 1617.207 kb on - strandat 1617.242 kb on + strandat 1617.243 kb on - strandat 1617.243 kb on - strandat 1617.252 kb on + strandat 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.561 kb on + strand, within PP_1417at 1617.562 kb on - strand, within PP_1417at 1617.627 kb on + strand, within PP_1417at 1617.628 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.646 kb on - strand, within PP_1417at 1617.804 kb on + strandat 1617.825 kb on + strandat 1617.826 kb on - strandat 1617.826 kb on - strandat 1617.826 kb on - strandat 1617.838 kb on - strandat 1617.919 kb on + strandat 1617.920 kb on - strandat 1617.955 kb on + strandat 1617.956 kb on - strandat 1617.956 kb on - strandat 1617.979 kb on + strandat 1617.979 kb on + strandat 1617.980 kb on - strandat 1617.980 kb on - strandat 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.093 kb on + strand, within PP_1418at 1618.123 kb on + strand, within PP_1418at 1618.124 kb on - strand, within PP_1418

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,615,443 + PP_1415 0.71 -0.3
1,615,443 + PP_1415 0.71 -0.6
1,615,443 + -0.1
1,615,443 + PP_1415 0.71 +0.2
1,615,444 - PP_1415 0.71 -0.1
1,615,817 - -3.4
1,615,822 + -0.4
1,615,982 + PP_1416 0.16 -0.2
1,615,983 - PP_1416 0.16 +1.0
1,616,025 + PP_1416 0.19 -1.3
1,616,026 - PP_1416 0.19 +0.4
1,616,143 + PP_1416 0.26 -1.2
1,616,144 - PP_1416 0.26 -1.6
1,616,144 - PP_1416 0.26 -1.2
1,616,144 - PP_1416 0.26 -0.4
1,616,193 + -0.9
1,616,193 + PP_1416 0.30 -0.6
1,616,193 + PP_1416 0.30 -0.3
1,616,193 + PP_1416 0.30 -2.9
1,616,194 - PP_1416 0.30 -2.4
1,616,238 - PP_1416 0.33 -1.0
1,616,417 + PP_1416 0.44 -3.3
1,616,417 + PP_1416 0.44 -3.4
1,616,418 - PP_1416 0.44 -0.8
1,616,538 + PP_1416 0.52 -0.1
1,616,538 + PP_1416 0.52 -2.2
1,616,813 + PP_1416 0.71 -1.8
1,616,814 - PP_1416 0.71 -0.8
1,616,814 - PP_1416 0.71 -1.0
1,617,207 - -0.5
1,617,242 + +0.3
1,617,243 - +0.2
1,617,243 - -0.6
1,617,252 + -1.6
1,617,561 + PP_1417 0.62 -2.5
1,617,561 + PP_1417 0.62 -3.4
1,617,561 + PP_1417 0.62 -1.8
1,617,561 + PP_1417 0.62 -3.0
1,617,562 - PP_1417 0.62 -2.7
1,617,627 + PP_1417 0.76 -0.4
1,617,628 - PP_1417 0.76 -0.5
1,617,646 - PP_1417 0.79 +1.1
1,617,646 - PP_1417 0.79 -0.9
1,617,646 - PP_1417 0.79 +0.2
1,617,804 + -0.7
1,617,825 + -1.7
1,617,826 - -0.4
1,617,826 - -0.8
1,617,826 - +1.1
1,617,838 - -1.2
1,617,919 + +0.1
1,617,920 - +0.4
1,617,955 + -0.6
1,617,956 - -4.3
1,617,956 - +0.4
1,617,979 + -4.5
1,617,979 + -1.7
1,617,980 - -5.2
1,617,980 - -2.7
1,618,093 + PP_1418 0.18 -4.6
1,618,093 + PP_1418 0.18 -2.6
1,618,093 + PP_1418 0.18 -3.0
1,618,123 + PP_1418 0.21 -2.6
1,618,124 - PP_1418 0.21 -4.3

Or see this region's nucleotide sequence