Strain Fitness in Pseudomonas putida KT2440 around PP_1367

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1365 and PP_1366 are separated by 73 nucleotidesPP_1366 and PP_1367 are separated by 283 nucleotidesPP_1367 and PP_5468 are separated by 92 nucleotidesPP_5468 and PP_1368 overlap by 95 nucleotides PP_1365: PP_1365 - exodeoxyribonuclease I, at 1,553,929 to 1,555,362 _1365 PP_1366: PP_1366 - Transcriptional regulator MvaT, P16 subunit, at 1,555,436 to 1,555,813 _1366 PP_1367: PP_1367 - formyltetrahydrofolate hydrolase, at 1,556,097 to 1,556,948 _1367 PP_5468: PP_5468 - conserved protein of unknown function, at 1,557,041 to 1,557,274 _5468 PP_1368: PP_1368 - putative membrane protein containing a glycosyltransferase domain, at 1,557,180 to 1,558,172 _1368 Position (kb) 1556 1557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1555.349 kb on - strandat 1555.349 kb on - strandat 1555.370 kb on + strandat 1555.371 kb on - strandat 1555.425 kb on + strandat 1555.557 kb on + strandat 1555.592 kb on - strand, within PP_1366at 1555.592 kb on - strand, within PP_1366at 1555.854 kb on + strandat 1555.855 kb on - strandat 1555.857 kb on + strandat 1555.857 kb on + strandat 1555.858 kb on - strandat 1555.868 kb on + strandat 1555.869 kb on - strandat 1555.885 kb on - strandat 1555.885 kb on - strandat 1555.899 kb on - strandat 1556.011 kb on + strandat 1556.011 kb on + strandat 1556.011 kb on + strandat 1556.011 kb on + strandat 1556.012 kb on - strandat 1556.012 kb on - strandat 1556.034 kb on + strandat 1556.064 kb on + strandat 1556.064 kb on + strandat 1556.064 kb on + strandat 1556.106 kb on + strandat 1556.106 kb on + strandat 1556.107 kb on - strandat 1556.137 kb on + strandat 1556.138 kb on - strandat 1556.138 kb on - strandat 1556.138 kb on - strandat 1556.175 kb on + strandat 1556.175 kb on + strandat 1556.175 kb on + strandat 1556.176 kb on - strandat 1556.176 kb on - strandat 1556.176 kb on - strandat 1556.365 kb on + strand, within PP_1367at 1556.366 kb on - strand, within PP_1367at 1556.366 kb on - strand, within PP_1367at 1556.516 kb on - strand, within PP_1367at 1556.516 kb on - strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.607 kb on + strand, within PP_1367at 1556.608 kb on - strand, within PP_1367at 1556.643 kb on + strand, within PP_1367at 1556.643 kb on + strand, within PP_1367at 1556.644 kb on - strand, within PP_1367at 1556.706 kb on + strand, within PP_1367at 1556.707 kb on - strand, within PP_1367at 1556.757 kb on + strand, within PP_1367at 1556.758 kb on - strand, within PP_1367at 1556.758 kb on - strand, within PP_1367at 1556.924 kb on + strandat 1556.925 kb on - strandat 1556.925 kb on - strandat 1557.259 kb on + strandat 1557.265 kb on + strandat 1557.265 kb on + strandat 1557.265 kb on + strandat 1557.266 kb on - strandat 1557.268 kb on + strandat 1557.269 kb on - strandat 1557.269 kb on - strandat 1557.273 kb on - strandat 1557.285 kb on + strand, within PP_1368at 1557.444 kb on + strand, within PP_1368at 1557.469 kb on + strand, within PP_1368at 1557.469 kb on + strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.470 kb on - strand, within PP_1368at 1557.482 kb on - strand, within PP_1368at 1557.711 kb on + strand, within PP_1368

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,555,349 - +1.1
1,555,349 - +1.7
1,555,370 + +1.4
1,555,371 - +1.0
1,555,425 + -0.9
1,555,557 + +1.5
1,555,592 - PP_1366 0.41 -0.1
1,555,592 - PP_1366 0.41 +0.4
1,555,854 + -1.3
1,555,855 - +0.5
1,555,857 + +0.7
1,555,857 + +1.4
1,555,858 - +1.0
1,555,868 + +1.0
1,555,869 - -1.2
1,555,885 - -0.1
1,555,885 - -0.3
1,555,899 - -1.1
1,556,011 + +0.6
1,556,011 + +1.0
1,556,011 + +1.0
1,556,011 + -0.6
1,556,012 - +0.2
1,556,012 - +0.8
1,556,034 + +1.1
1,556,064 + -1.9
1,556,064 + +2.0
1,556,064 + +1.4
1,556,106 + +1.2
1,556,106 + -1.1
1,556,107 - +0.2
1,556,137 + +1.6
1,556,138 - +0.1
1,556,138 - +0.3
1,556,138 - +1.6
1,556,175 + -1.9
1,556,175 + -0.9
1,556,175 + -0.3
1,556,176 - -2.5
1,556,176 - +0.3
1,556,176 - +1.7
1,556,365 + PP_1367 0.31 -2.8
1,556,366 - PP_1367 0.32 +1.1
1,556,366 - PP_1367 0.32 +1.0
1,556,516 - PP_1367 0.49 +1.2
1,556,516 - PP_1367 0.49 +2.1
1,556,607 + PP_1367 0.60 +2.0
1,556,607 + PP_1367 0.60 +0.1
1,556,607 + PP_1367 0.60 -2.6
1,556,607 + PP_1367 0.60 -0.2
1,556,608 - PP_1367 0.60 +1.2
1,556,643 + PP_1367 0.64 +0.4
1,556,643 + PP_1367 0.64 +1.1
1,556,644 - PP_1367 0.64 -0.2
1,556,706 + PP_1367 0.71 +2.2
1,556,707 - PP_1367 0.72 +0.1
1,556,757 + PP_1367 0.77 -1.2
1,556,758 - PP_1367 0.78 -1.5
1,556,758 - PP_1367 0.78 +0.6
1,556,924 + +0.5
1,556,925 - -0.5
1,556,925 - +0.4
1,557,259 + -0.1
1,557,265 + +0.6
1,557,265 + +0.2
1,557,265 + +1.1
1,557,266 - +0.6
1,557,268 + +0.0
1,557,269 - +0.4
1,557,269 - +0.5
1,557,273 - -0.2
1,557,285 + PP_1368 0.11 +1.4
1,557,444 + PP_1368 0.27 +0.5
1,557,469 + PP_1368 0.29 +0.3
1,557,469 + PP_1368 0.29 +0.7
1,557,470 - PP_1368 0.29 +0.1
1,557,470 - PP_1368 0.29 -0.1
1,557,470 - PP_1368 0.29 -1.5
1,557,482 - PP_1368 0.30 +0.2
1,557,711 + PP_1368 0.53 -0.1

Or see this region's nucleotide sequence