Strain Fitness in Pseudomonas putida KT2440 around PP_1041

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1039 and PP_1040 overlap by 4 nucleotidesPP_1040 and PP_1041 overlap by 1 nucleotidesPP_1041 and PP_1042 are separated by 145 nucleotides PP_1039: PP_1039 - sec-independent protein translocase protein, at 1,189,052 to 1,189,813 _1039 PP_1040: PP_1040 - Sec-independent protein translocase TatB, at 1,189,810 to 1,190,100 _1040 PP_1041: PP_1041 - twin arginine protein export complex subunit, at 1,190,100 to 1,190,333 _1041 PP_1042: PP_1042 - Type II secretion system protein K, at 1,190,479 to 1,191,444 _1042 Position (kb) 1190 1191Strain fitness (log2 ratio) -2 -1 0 1at 1189.218 kb on + strand, within PP_1039at 1189.219 kb on - strandat 1189.219 kb on - strand, within PP_1039at 1189.219 kb on - strand, within PP_1039at 1189.219 kb on - strand, within PP_1039at 1189.219 kb on - strand, within PP_1039at 1189.219 kb on - strand, within PP_1039at 1189.330 kb on + strand, within PP_1039at 1189.342 kb on - strand, within PP_1039at 1189.342 kb on - strand, within PP_1039at 1189.446 kb on + strand, within PP_1039at 1189.447 kb on - strand, within PP_1039at 1189.447 kb on - strand, within PP_1039at 1189.447 kb on - strand, within PP_1039at 1189.447 kb on - strand, within PP_1039at 1189.447 kb on - strand, within PP_1039at 1189.667 kb on + strand, within PP_1039at 1189.677 kb on + strand, within PP_1039at 1189.677 kb on + strand, within PP_1039at 1189.677 kb on + strand, within PP_1039at 1189.678 kb on - strand, within PP_1039at 1189.678 kb on - strand, within PP_1039at 1189.678 kb on - strand, within PP_1039at 1189.678 kb on - strand, within PP_1039at 1190.271 kb on - strand, within PP_1041at 1190.299 kb on - strand, within PP_1041at 1190.349 kb on - strandat 1190.349 kb on - strandat 1190.349 kb on - strandat 1190.384 kb on + strandat 1190.421 kb on - strandat 1190.731 kb on + strand, within PP_1042at 1190.842 kb on + strand, within PP_1042at 1190.843 kb on - strand, within PP_1042at 1190.847 kb on - strand, within PP_1042at 1191.142 kb on + strand, within PP_1042at 1191.142 kb on + strand, within PP_1042at 1191.143 kb on - strand, within PP_1042at 1191.143 kb on - strand, within PP_1042at 1191.143 kb on - strand, within PP_1042

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,189,218 + PP_1039 0.22 -0.9
1,189,219 - +0.6
1,189,219 - PP_1039 0.22 +0.4
1,189,219 - PP_1039 0.22 -0.5
1,189,219 - PP_1039 0.22 -1.1
1,189,219 - PP_1039 0.22 +0.1
1,189,219 - PP_1039 0.22 +0.8
1,189,330 + PP_1039 0.36 +1.2
1,189,342 - PP_1039 0.38 +0.5
1,189,342 - PP_1039 0.38 +0.2
1,189,446 + PP_1039 0.52 +0.3
1,189,447 - PP_1039 0.52 +0.1
1,189,447 - PP_1039 0.52 +0.2
1,189,447 - PP_1039 0.52 +0.2
1,189,447 - PP_1039 0.52 -0.7
1,189,447 - PP_1039 0.52 -0.1
1,189,667 + PP_1039 0.81 +0.9
1,189,677 + PP_1039 0.82 -0.4
1,189,677 + PP_1039 0.82 -1.0
1,189,677 + PP_1039 0.82 -0.1
1,189,678 - PP_1039 0.82 +0.6
1,189,678 - PP_1039 0.82 -0.4
1,189,678 - PP_1039 0.82 -0.0
1,189,678 - PP_1039 0.82 +0.8
1,190,271 - PP_1041 0.73 +0.9
1,190,299 - PP_1041 0.85 +0.3
1,190,349 - +0.3
1,190,349 - -2.4
1,190,349 - +1.3
1,190,384 + +1.6
1,190,421 - +1.1
1,190,731 + PP_1042 0.26 +0.2
1,190,842 + PP_1042 0.38 -0.4
1,190,843 - PP_1042 0.38 +0.7
1,190,847 - PP_1042 0.38 -0.0
1,191,142 + PP_1042 0.69 +0.6
1,191,142 + PP_1042 0.69 -1.7
1,191,143 - PP_1042 0.69 -0.1
1,191,143 - PP_1042 0.69 +0.5
1,191,143 - PP_1042 0.69 -0.5

Or see this region's nucleotide sequence