Strain Fitness in Pseudomonas putida KT2440 around PP_1022

Experiment: Growth at pH9 and (C) Trisodium citrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1021 and PP_1022 are separated by 211 nucleotidesPP_1022 and PP_1023 overlap by 29 nucleotidesPP_1023 and PP_1024 overlap by 10 nucleotides PP_1021: PP_1021 - DNA-binding transcriptional regulator, at 1,164,541 to 1,165,404 _1021 PP_1022: PP_1022 - glucose 6-phosphate-1-dehydrogenase, at 1,165,616 to 1,167,085 _1022 PP_1023: PP_1023 - 6-phosphogluconolactonase, at 1,167,057 to 1,167,785 _1023 PP_1024: PP_1024 - KHG/KDPG aldolase, at 1,167,776 to 1,168,483 _1024 Position (kb) 1165 1166 1167 1168Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1164.655 kb on + strand, within PP_1021at 1164.656 kb on - strand, within PP_1021at 1164.656 kb on - strand, within PP_1021at 1164.701 kb on + strand, within PP_1021at 1164.701 kb on + strand, within PP_1021at 1164.702 kb on - strand, within PP_1021at 1164.702 kb on - strand, within PP_1021at 1164.702 kb on - strand, within PP_1021at 1165.148 kb on - strand, within PP_1021at 1165.163 kb on + strand, within PP_1021at 1165.163 kb on + strand, within PP_1021at 1165.479 kb on - strandat 1165.503 kb on + strandat 1165.529 kb on + strandat 1165.552 kb on + strandat 1165.834 kb on + strand, within PP_1022at 1165.834 kb on + strand, within PP_1022at 1165.877 kb on + strand, within PP_1022at 1165.910 kb on + strand, within PP_1022at 1165.958 kb on + strand, within PP_1022at 1165.958 kb on + strand, within PP_1022at 1166.141 kb on + strand, within PP_1022at 1166.242 kb on + strand, within PP_1022at 1166.471 kb on + strand, within PP_1022at 1166.471 kb on + strand, within PP_1022at 1166.582 kb on - strand, within PP_1022at 1166.681 kb on + strand, within PP_1022at 1166.681 kb on + strand, within PP_1022at 1166.681 kb on + strand, within PP_1022at 1166.681 kb on + strand, within PP_1022at 1166.681 kb on + strand, within PP_1022at 1166.716 kb on + strand, within PP_1022at 1166.870 kb on + strand, within PP_1022at 1166.870 kb on + strand, within PP_1022at 1166.871 kb on - strand, within PP_1022at 1166.981 kb on - strandat 1166.981 kb on - strandat 1166.981 kb on - strandat 1167.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH9 and (C) Trisodium citrate
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1,164,655 + PP_1021 0.13 +0.0
1,164,656 - PP_1021 0.13 +0.3
1,164,656 - PP_1021 0.13 -0.4
1,164,701 + PP_1021 0.19 +0.9
1,164,701 + PP_1021 0.19 -0.7
1,164,702 - PP_1021 0.19 +0.4
1,164,702 - PP_1021 0.19 -1.0
1,164,702 - PP_1021 0.19 +0.9
1,165,148 - PP_1021 0.70 +0.6
1,165,163 + PP_1021 0.72 +0.6
1,165,163 + PP_1021 0.72 -2.7
1,165,479 - +0.6
1,165,503 + -0.3
1,165,529 + +0.8
1,165,552 + -0.8
1,165,834 + PP_1022 0.15 +0.9
1,165,834 + PP_1022 0.15 -0.7
1,165,877 + PP_1022 0.18 -2.7
1,165,910 + PP_1022 0.20 -2.7
1,165,958 + PP_1022 0.23 -1.2
1,165,958 + PP_1022 0.23 -0.5
1,166,141 + PP_1022 0.36 +1.3
1,166,242 + PP_1022 0.43 +0.8
1,166,471 + PP_1022 0.58 -2.4
1,166,471 + PP_1022 0.58 +0.9
1,166,582 - PP_1022 0.66 +1.6
1,166,681 + PP_1022 0.72 +0.6
1,166,681 + PP_1022 0.72 -1.7
1,166,681 + PP_1022 0.72 +1.0
1,166,681 + PP_1022 0.72 +1.5
1,166,681 + PP_1022 0.72 +1.6
1,166,716 + PP_1022 0.75 +3.1
1,166,870 + PP_1022 0.85 +1.4
1,166,870 + PP_1022 0.85 +2.2
1,166,871 - PP_1022 0.85 +0.0
1,166,981 - +1.6
1,166,981 - +1.6
1,166,981 - -0.4
1,167,079 + -1.2

Or see this region's nucleotide sequence