Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00285 and PS417_00290 are separated by 85 nucleotides PS417_00290 and PS417_00295 are separated by 131 nucleotides
PS417_00285: PS417_00285 - carbonate dehydratase, at 55,595 to 56,326
_00285
PS417_00290: PS417_00290 - SulP family inorganic anion transporter, at 56,412 to 57,959
_00290
PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738
_00295
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.525 kb on + strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.526 kb on - strand at 55.577 kb on + strand at 55.610 kb on - strand at 55.939 kb on - strand, within PS417_00285 at 55.939 kb on - strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.196 kb on + strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.201 kb on - strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.216 kb on + strand, within PS417_00285 at 56.324 kb on + strand at 56.437 kb on + strand at 56.763 kb on + strand, within PS417_00290 at 56.763 kb on + strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.764 kb on - strand, within PS417_00290 at 56.768 kb on + strand, within PS417_00290 at 56.769 kb on - strand, within PS417_00290 at 56.801 kb on - strand, within PS417_00290 at 56.958 kb on + strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 56.959 kb on - strand, within PS417_00290 at 57.019 kb on + strand, within PS417_00290 at 57.020 kb on - strand, within PS417_00290 at 57.333 kb on - strand, within PS417_00290 at 57.471 kb on + strand, within PS417_00290 at 57.542 kb on + strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.543 kb on - strand, within PS417_00290 at 57.547 kb on - strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.595 kb on + strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.802 kb on - strand, within PS417_00290 at 57.934 kb on + strand at 57.934 kb on + strand at 57.935 kb on - strand at 58.077 kb on - strand at 58.080 kb on - strand at 58.080 kb on - strand at 58.256 kb on + strand, within PS417_00295 at 58.364 kb on - strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.404 kb on + strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.573 kb on - strand, within PS417_00295 at 58.761 kb on + strand at 58.762 kb on - strand at 58.783 kb on + strand at 58.784 kb on - strand at 58.784 kb on - strand at 58.792 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 55,525 + +0.5 55,526 - +0.6 55,526 - -0.3 55,526 - +0.3 55,577 + -0.5 55,610 - -0.7 55,939 - PS417_00285 0.47 -2.6 55,939 - PS417_00285 0.47 -0.3 56,196 + PS417_00285 0.82 +0.2 56,196 + PS417_00285 0.82 -1.2 56,201 - PS417_00285 0.83 -0.4 56,201 - PS417_00285 0.83 +0.5 56,201 - PS417_00285 0.83 +0.5 56,216 + PS417_00285 0.85 +2.0 56,216 + PS417_00285 0.85 +0.6 56,216 + PS417_00285 0.85 -1.1 56,216 + PS417_00285 0.85 -0.1 56,324 + -0.1 56,437 + -0.7 56,763 + PS417_00290 0.23 +0.6 56,763 + PS417_00290 0.23 +1.0 56,764 - PS417_00290 0.23 -0.7 56,764 - PS417_00290 0.23 +0.8 56,768 + PS417_00290 0.23 -0.1 56,769 - PS417_00290 0.23 -1.3 56,801 - PS417_00290 0.25 +1.1 56,958 + PS417_00290 0.35 -0.3 56,959 - PS417_00290 0.35 +0.4 56,959 - PS417_00290 0.35 +2.3 57,019 + PS417_00290 0.39 -0.3 57,020 - PS417_00290 0.39 +1.9 57,333 - PS417_00290 0.59 +0.6 57,471 + PS417_00290 0.68 -0.3 57,542 + PS417_00290 0.73 -0.3 57,543 - PS417_00290 0.73 +0.2 57,543 - PS417_00290 0.73 +0.0 57,543 - PS417_00290 0.73 -3.1 57,547 - PS417_00290 0.73 +0.9 57,595 + PS417_00290 0.76 +0.8 57,595 + PS417_00290 0.76 +0.5 57,802 - PS417_00290 0.90 +0.6 57,802 - PS417_00290 0.90 +1.7 57,934 + -0.3 57,934 + +0.5 57,935 - -0.5 58,077 - -0.6 58,080 - +0.7 58,080 - +0.1 58,256 + PS417_00295 0.25 -0.1 58,364 - PS417_00295 0.42 +0.1 58,365 + PS417_00295 0.42 -0.7 58,365 + PS417_00295 0.42 -0.5 58,366 - PS417_00295 0.42 -0.5 58,366 - PS417_00295 0.42 +0.3 58,404 + PS417_00295 0.48 -0.5 58,405 - PS417_00295 0.48 -0.5 58,405 - PS417_00295 0.48 -0.2 58,573 - PS417_00295 0.74 +0.9 58,761 + +0.1 58,762 - -1.8 58,783 + -1.1 58,784 - +1.9 58,784 - +0.7 58,792 + -0.4 58,794 + -0.1 58,794 + -0.3 58,794 + +0.6 58,794 + -0.5 58,875 + -0.5
Or see this region's nucleotide sequence