Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23270 and PS417_23275 are separated by 458 nucleotides PS417_23275 and PS417_23280 are separated by 10 nucleotides PS417_23280 and PS417_23285 are separated by 121 nucleotides PS417_23285 and PS417_23290 are separated by 664 nucleotides
PS417_23270: PS417_23270 - 23S ribosomal RNA, at 5,037,543 to 5,040,458
_23270
PS417_23275: PS417_23275 - tRNA-Ala, at 5,040,917 to 5,040,992
_23275
PS417_23280: PS417_23280 - tRNA-Ile, at 5,041,003 to 5,041,079
_23280
PS417_23285: PS417_23285 - 16S ribosomal RNA, at 5,041,201 to 5,042,738
_23285
PS417_23290: PS417_23290 - hypothetical protein, at 5,043,403 to 5,043,732
_23290
Position (kb)
5041
5042
5043 Strain fitness (log2 ratio)
-2
-1
0
1 at 5040.914 kb on - strand at 5040.914 kb on - strand at 5040.914 kb on - strand at 5040.916 kb on - strand at 5040.916 kb on - strand at 5041.059 kb on - strand, within PS417_23280 at 5041.072 kb on - strand at 5041.072 kb on - strand at 5041.072 kb on - strand at 5041.072 kb on - strand at 5041.072 kb on - strand at 5041.072 kb on - strand at 5041.100 kb on - strand at 5041.100 kb on - strand at 5041.104 kb on - strand at 5041.104 kb on - strand at 5041.104 kb on - strand at 5041.104 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5041.179 kb on - strand at 5042.941 kb on - strand at 5042.941 kb on - strand at 5042.941 kb on - strand at 5042.969 kb on + strand at 5043.059 kb on - strand at 5043.184 kb on + strand at 5043.201 kb on + strand at 5043.201 kb on + strand at 5043.230 kb on - strand at 5043.241 kb on - strand at 5043.269 kb on + strand at 5043.480 kb on - strand, within PS417_23290 at 5043.505 kb on + strand, within PS417_23290 at 5043.505 kb on + strand, within PS417_23290 at 5043.506 kb on - strand, within PS417_23290 at 5043.506 kb on - strand, within PS417_23290 at 5043.620 kb on + strand, within PS417_23290 at 5043.620 kb on + strand, within PS417_23290 at 5043.620 kb on + strand, within PS417_23290 at 5043.712 kb on + strand at 5043.713 kb on - strand at 5043.728 kb on + strand at 5043.729 kb on - strand at 5043.729 kb on - strand at 5043.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,040,914 - +0.1 5,040,914 - +0.8 5,040,914 - -0.1 5,040,916 - +0.1 5,040,916 - -0.2 5,041,059 - PS417_23280 0.73 -1.3 5,041,072 - +1.0 5,041,072 - -0.7 5,041,072 - +1.0 5,041,072 - -0.0 5,041,072 - -0.4 5,041,072 - -1.2 5,041,100 - +0.3 5,041,100 - -0.4 5,041,104 - +0.4 5,041,104 - -0.9 5,041,104 - +0.2 5,041,104 - +1.0 5,041,179 - -0.0 5,041,179 - -0.3 5,041,179 - +0.1 5,041,179 - -0.8 5,041,179 - -0.7 5,041,179 - -2.1 5,041,179 - +0.4 5,041,179 - +1.2 5,041,179 - +0.1 5,042,941 - +0.8 5,042,941 - -0.7 5,042,941 - -0.3 5,042,969 + -0.2 5,043,059 - +0.2 5,043,184 + +1.6 5,043,201 + +0.1 5,043,201 + +0.2 5,043,230 - -0.5 5,043,241 - +1.6 5,043,269 + -1.5 5,043,480 - PS417_23290 0.23 -0.1 5,043,505 + PS417_23290 0.31 -0.3 5,043,505 + PS417_23290 0.31 -0.7 5,043,506 - PS417_23290 0.31 +0.3 5,043,506 - PS417_23290 0.31 +1.2 5,043,620 + PS417_23290 0.66 +0.3 5,043,620 + PS417_23290 0.66 -0.3 5,043,620 + PS417_23290 0.66 +1.6 5,043,712 + +1.3 5,043,713 - -0.4 5,043,728 + +0.6 5,043,729 - -1.3 5,043,729 - +1.1 5,043,731 - -0.1
Or see this region's nucleotide sequence