Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22915 and PS417_22920 are separated by 5 nucleotides PS417_22920 and PS417_22925 are separated by 250 nucleotides PS417_22925 and PS417_22930 are separated by 220 nucleotides
PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377
_22915
PS417_22920: PS417_22920 - 30S ribosomal protein S16, at 4,965,383 to 4,965,634
_22920
PS417_22925: PS417_22925 - RNA-binding protein, at 4,965,885 to 4,967,261
_22925
PS417_22930: PS417_22930 - cytochrome C assembly protein, at 4,967,482 to 4,968,294
_22930
Position (kb) 4965
4966
4967
4968 Strain fitness (log2 ratio) -1
0
1
2 at 4965.778 kb on - strand at 4965.780 kb on - strand at 4965.881 kb on + strand at 4965.917 kb on + strand at 4965.917 kb on + strand at 4965.917 kb on + strand at 4965.917 kb on + strand at 4965.918 kb on - strand at 4965.918 kb on - strand at 4967.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,965,778 - +2.5 4,965,780 - +1.4 4,965,881 + -0.8 4,965,917 + -0.5 4,965,917 + +1.3 4,965,917 + -0.2 4,965,917 + +1.2 4,965,918 - +0.2 4,965,918 - -0.0 4,967,288 - -0.4
Or see this region's nucleotide sequence