Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20235 and PS417_20240 are separated by 65 nucleotides PS417_20240 and PS417_20245 overlap by 4 nucleotides PS417_20245 and PS417_20250 overlap by 4 nucleotides PS417_20250 and PS417_20255 are separated by 50 nucleotides
PS417_20235: PS417_20235 - hypothetical protein, at 4,395,492 to 4,396,214
_20235
PS417_20240: PS417_20240 - hypothetical protein, at 4,396,280 to 4,397,146
_20240
PS417_20245: PS417_20245 - copper resistance protein CopD, at 4,397,143 to 4,397,997
_20245
PS417_20250: PS417_20250 - copper resistance protein CopC, at 4,397,994 to 4,398,380
_20250
PS417_20255: PS417_20255 - copper resistance protein CopB, at 4,398,431 to 4,399,246
_20255
Position (kb)
4397
4398 Strain fitness (log2 ratio)
-2
-1
0
1 at 4396.149 kb on + strand at 4396.209 kb on + strand at 4396.209 kb on + strand at 4396.210 kb on - strand at 4396.299 kb on + strand at 4396.308 kb on + strand at 4396.309 kb on - strand at 4396.309 kb on - strand at 4396.309 kb on - strand at 4396.311 kb on + strand at 4396.312 kb on - strand at 4396.366 kb on + strand at 4396.381 kb on - strand, within PS417_20240 at 4396.403 kb on + strand, within PS417_20240 at 4396.557 kb on + strand, within PS417_20240 at 4396.712 kb on + strand, within PS417_20240 at 4396.997 kb on + strand, within PS417_20240 at 4396.998 kb on - strand, within PS417_20240 at 4397.119 kb on + strand at 4397.120 kb on - strand at 4397.120 kb on - strand at 4397.120 kb on - strand at 4397.411 kb on + strand, within PS417_20245 at 4397.591 kb on - strand, within PS417_20245 at 4397.591 kb on - strand, within PS417_20245 at 4397.912 kb on + strand at 4397.912 kb on + strand at 4397.913 kb on - strand at 4397.913 kb on - strand at 4398.070 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.116 kb on + strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.117 kb on - strand, within PS417_20250 at 4398.369 kb on - strand at 4398.369 kb on - strand at 4398.498 kb on + strand at 4398.544 kb on - strand, within PS417_20255 at 4398.564 kb on - strand, within PS417_20255 at 4398.746 kb on + strand, within PS417_20255 at 4398.771 kb on + strand, within PS417_20255 at 4398.948 kb on - strand, within PS417_20255
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,396,149 + +1.5 4,396,209 + +1.0 4,396,209 + -1.0 4,396,210 - +0.8 4,396,299 + +0.2 4,396,308 + -1.2 4,396,309 - +0.5 4,396,309 - +0.1 4,396,309 - +0.9 4,396,311 + -1.3 4,396,312 - -0.3 4,396,366 + +1.7 4,396,381 - PS417_20240 0.12 +1.6 4,396,403 + PS417_20240 0.14 +0.7 4,396,557 + PS417_20240 0.32 +0.5 4,396,712 + PS417_20240 0.50 -0.3 4,396,997 + PS417_20240 0.83 +0.3 4,396,998 - PS417_20240 0.83 -0.6 4,397,119 + +0.6 4,397,120 - +0.5 4,397,120 - +1.4 4,397,120 - +1.5 4,397,411 + PS417_20245 0.31 +0.5 4,397,591 - PS417_20245 0.52 -2.3 4,397,591 - PS417_20245 0.52 +0.1 4,397,912 + +0.0 4,397,912 + -0.2 4,397,913 - +0.6 4,397,913 - +1.6 4,398,070 + PS417_20250 0.20 +0.3 4,398,116 + PS417_20250 0.32 -1.2 4,398,116 + PS417_20250 0.32 +0.1 4,398,117 - PS417_20250 0.32 +1.0 4,398,117 - PS417_20250 0.32 +0.2 4,398,369 - +0.8 4,398,369 - +0.2 4,398,498 + +0.3 4,398,544 - PS417_20255 0.14 -0.1 4,398,564 - PS417_20255 0.16 +0.0 4,398,746 + PS417_20255 0.39 +0.1 4,398,771 + PS417_20255 0.42 -1.3 4,398,948 - PS417_20255 0.63 -0.6
Or see this region's nucleotide sequence