Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18865 and PS417_18870 are separated by 59 nucleotides PS417_18870 and PS417_18875 are separated by 16 nucleotides PS417_18875 and PS417_18880 are separated by 39 nucleotides PS417_18880 and PS417_18885 overlap by 4 nucleotides
PS417_18865: PS417_18865 - hypothetical protein, at 4,086,997 to 4,087,647
_18865
PS417_18870: PS417_18870 - hypothetical protein, at 4,087,707 to 4,088,282
_18870
PS417_18875: PS417_18875 - hypothetical protein, at 4,088,299 to 4,088,589
_18875
PS417_18880: PS417_18880 - SAM-dependent methyltransferase, at 4,088,629 to 4,089,324
_18880
PS417_18885: PS417_18885 - GntR family transcriptional regulator, at 4,089,321 to 4,090,040
_18885
Position (kb) 4088
4089
4090 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4087.645 kb on + strand at 4087.646 kb on - strand at 4087.646 kb on - strand at 4087.799 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4088.291 kb on - strand at 4088.300 kb on + strand at 4088.602 kb on - strand at 4088.825 kb on + strand, within PS417_18880 at 4088.825 kb on + strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.867 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4089.141 kb on + strand, within PS417_18880 at 4089.555 kb on - strand, within PS417_18885 at 4089.555 kb on - strand, within PS417_18885 at 4089.638 kb on - strand, within PS417_18885 at 4090.010 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.232 kb on + strand at 4090.233 kb on - strand at 4090.233 kb on - strand at 4090.233 kb on - strand at 4090.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,087,645 + -0.3 4,087,646 - +0.1 4,087,646 - +0.8 4,087,799 + PS417_18870 0.16 -0.2 4,087,818 + PS417_18870 0.19 -1.3 4,087,818 + PS417_18870 0.19 +0.3 4,087,818 + PS417_18870 0.19 -2.6 4,087,818 + PS417_18870 0.19 +0.5 4,087,819 - PS417_18870 0.19 -1.5 4,087,819 - PS417_18870 0.19 +0.1 4,087,819 - PS417_18870 0.19 +0.3 4,087,916 + PS417_18870 0.36 +0.5 4,087,916 + PS417_18870 0.36 -0.4 4,087,916 + PS417_18870 0.36 -0.2 4,087,916 + PS417_18870 0.36 -0.2 4,087,916 + PS417_18870 0.36 +0.1 4,087,917 - PS417_18870 0.36 -0.4 4,087,917 - PS417_18870 0.36 +0.4 4,087,917 - PS417_18870 0.36 +0.0 4,087,917 - PS417_18870 0.36 +0.0 4,087,917 - PS417_18870 0.36 +0.5 4,087,917 - PS417_18870 0.36 -0.9 4,087,917 - -0.6 4,087,917 - PS417_18870 0.36 +0.1 4,087,917 - PS417_18870 0.36 -0.1 4,087,982 - PS417_18870 0.48 +0.1 4,087,982 - PS417_18870 0.48 +0.3 4,087,982 - PS417_18870 0.48 -3.2 4,088,291 - -0.1 4,088,300 + +0.6 4,088,602 - -1.6 4,088,825 + PS417_18880 0.28 +0.3 4,088,825 + PS417_18880 0.28 -0.7 4,088,826 - PS417_18880 0.28 +0.1 4,088,826 - PS417_18880 0.28 -0.7 4,088,826 - PS417_18880 0.28 -0.1 4,088,867 + PS417_18880 0.34 -0.4 4,088,907 + PS417_18880 0.40 -0.9 4,088,907 + -0.9 4,088,907 + PS417_18880 0.40 +0.8 4,088,907 + PS417_18880 0.40 -0.9 4,088,908 - PS417_18880 0.40 +0.1 4,088,908 - PS417_18880 0.40 +0.2 4,089,141 + PS417_18880 0.74 -2.0 4,089,555 - PS417_18885 0.33 -1.1 4,089,555 - PS417_18885 0.33 +0.5 4,089,638 - PS417_18885 0.44 -0.6 4,090,010 + +1.7 4,090,232 + -0.5 4,090,232 + -1.1 4,090,232 + -0.0 4,090,232 + -0.5 4,090,232 + +2.4 4,090,233 - -0.3 4,090,233 - -0.2 4,090,233 - -0.6 4,090,269 - +0.9
Or see this region's nucleotide sequence