Strain Fitness in Pseudomonas simiae WCS417 around PS417_14275

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14270 and PS417_14275 are separated by 185 nucleotidesPS417_14275 and PS417_14280 overlap by 4 nucleotides PS417_14270: PS417_14270 - phosphate ABC transporter substrate-binding protein, at 3,122,176 to 3,123,204 _14270 PS417_14275: PS417_14275 - hypothetical protein, at 3,123,390 to 3,124,307 _14275 PS417_14280: PS417_14280 - hypothetical protein, at 3,124,304 to 3,125,230 _14280 Position (kb) 3123 3124 3125Strain fitness (log2 ratio) -2 -1 0 1 2at 3122.468 kb on + strand, within PS417_14270at 3122.538 kb on - strand, within PS417_14270at 3122.826 kb on - strand, within PS417_14270at 3122.826 kb on - strand, within PS417_14270at 3123.002 kb on - strand, within PS417_14270at 3123.002 kb on - strand, within PS417_14270at 3123.030 kb on - strandat 3123.030 kb on - strand, within PS417_14270at 3123.030 kb on - strandat 3123.084 kb on - strand, within PS417_14270at 3123.263 kb on + strandat 3123.337 kb on - strandat 3123.400 kb on + strandat 3123.552 kb on + strandat 3123.553 kb on - strand, within PS417_14275at 3123.762 kb on + strand, within PS417_14275at 3123.762 kb on + strand, within PS417_14275at 3123.828 kb on + strand, within PS417_14275at 3123.828 kb on + strand, within PS417_14275at 3123.880 kb on - strand, within PS417_14275at 3123.952 kb on - strand, within PS417_14275at 3124.072 kb on - strand, within PS417_14275at 3124.201 kb on - strandat 3124.201 kb on - strand, within PS417_14275at 3124.257 kb on + strandat 3124.306 kb on - strandat 3124.306 kb on - strandat 3124.389 kb on + strandat 3124.389 kb on + strandat 3124.390 kb on - strandat 3124.390 kb on - strandat 3124.553 kb on + strand, within PS417_14280at 3124.762 kb on - strand, within PS417_14280at 3124.920 kb on + strand, within PS417_14280at 3124.921 kb on - strand, within PS417_14280at 3125.103 kb on - strand, within PS417_14280at 3125.300 kb on - strandat 3125.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,122,468 + PS417_14270 0.28 -2.5
3,122,538 - PS417_14270 0.35 +0.4
3,122,826 - PS417_14270 0.63 +0.6
3,122,826 - PS417_14270 0.63 +0.2
3,123,002 - PS417_14270 0.80 -0.3
3,123,002 - PS417_14270 0.80 -1.7
3,123,030 - +2.0
3,123,030 - PS417_14270 0.83 +0.3
3,123,030 - +0.1
3,123,084 - PS417_14270 0.88 +0.3
3,123,263 + +0.8
3,123,337 - -0.1
3,123,400 + -1.3
3,123,552 + +0.4
3,123,553 - PS417_14275 0.18 +0.2
3,123,762 + PS417_14275 0.41 +0.3
3,123,762 + PS417_14275 0.41 -0.9
3,123,828 + PS417_14275 0.48 -0.9
3,123,828 + PS417_14275 0.48 -0.8
3,123,880 - PS417_14275 0.53 -2.4
3,123,952 - PS417_14275 0.61 -0.8
3,124,072 - PS417_14275 0.74 -0.1
3,124,201 - +0.4
3,124,201 - PS417_14275 0.88 -0.8
3,124,257 + -0.6
3,124,306 - +0.0
3,124,306 - -0.8
3,124,389 + +0.1
3,124,389 + -1.3
3,124,390 - -2.0
3,124,390 - -0.8
3,124,553 + PS417_14280 0.27 +0.8
3,124,762 - PS417_14280 0.49 -0.5
3,124,920 + PS417_14280 0.66 -1.7
3,124,921 - PS417_14280 0.67 -0.0
3,125,103 - PS417_14280 0.86 -0.4
3,125,300 - +0.4
3,125,300 - -0.0

Or see this region's nucleotide sequence