Strain Fitness in Pseudomonas simiae WCS417 around PS417_13440

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13435 and PS417_13440 are separated by 200 nucleotidesPS417_13440 and PS417_13445 are separated by 9 nucleotides PS417_13435: PS417_13435 - LuxR family transcriptional regulator, at 2,955,185 to 2,955,970 _13435 PS417_13440: PS417_13440 - amino acid permease, at 2,956,171 to 2,957,535 _13440 PS417_13445: PS417_13445 - D-aminopeptidase, at 2,957,545 to 2,958,648 _13445 Position (kb) 2956 2957 2958Strain fitness (log2 ratio) -2 -1 0 1 2at 2955.172 kb on + strandat 2955.172 kb on + strandat 2955.221 kb on - strandat 2955.627 kb on + strand, within PS417_13435at 2955.627 kb on + strand, within PS417_13435at 2955.627 kb on + strand, within PS417_13435at 2955.639 kb on + strand, within PS417_13435at 2955.685 kb on - strand, within PS417_13435at 2955.753 kb on + strand, within PS417_13435at 2955.754 kb on - strand, within PS417_13435at 2955.754 kb on - strand, within PS417_13435at 2955.832 kb on - strand, within PS417_13435at 2956.047 kb on - strandat 2956.105 kb on + strandat 2956.106 kb on - strandat 2956.171 kb on - strandat 2956.171 kb on - strandat 2956.370 kb on - strand, within PS417_13440at 2956.411 kb on + strand, within PS417_13440at 2956.411 kb on + strand, within PS417_13440at 2956.412 kb on - strand, within PS417_13440at 2956.522 kb on + strand, within PS417_13440at 2956.522 kb on + strand, within PS417_13440at 2956.592 kb on - strand, within PS417_13440at 2956.810 kb on + strand, within PS417_13440at 2956.810 kb on + strand, within PS417_13440at 2956.811 kb on - strand, within PS417_13440at 2956.819 kb on + strand, within PS417_13440at 2957.103 kb on - strandat 2957.196 kb on + strand, within PS417_13440at 2957.291 kb on - strand, within PS417_13440at 2957.407 kb on + strandat 2957.411 kb on + strandat 2957.411 kb on + strandat 2957.411 kb on + strandat 2957.412 kb on - strandat 2957.412 kb on - strandat 2957.491 kb on + strandat 2957.533 kb on + strandat 2957.902 kb on + strand, within PS417_13445at 2958.342 kb on + strandat 2958.480 kb on + strand, within PS417_13445

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,955,172 + +0.4
2,955,172 + -1.1
2,955,221 - +0.1
2,955,627 + PS417_13435 0.56 +0.8
2,955,627 + PS417_13435 0.56 +0.2
2,955,627 + PS417_13435 0.56 +2.0
2,955,639 + PS417_13435 0.58 -0.6
2,955,685 - PS417_13435 0.64 -1.0
2,955,753 + PS417_13435 0.72 -0.9
2,955,754 - PS417_13435 0.72 +0.7
2,955,754 - PS417_13435 0.72 -2.4
2,955,832 - PS417_13435 0.82 +0.3
2,956,047 - -1.7
2,956,105 + -1.5
2,956,106 - +0.1
2,956,171 - -0.2
2,956,171 - -1.8
2,956,370 - PS417_13440 0.15 +0.1
2,956,411 + PS417_13440 0.18 +0.6
2,956,411 + PS417_13440 0.18 +1.4
2,956,412 - PS417_13440 0.18 -0.4
2,956,522 + PS417_13440 0.26 -1.3
2,956,522 + PS417_13440 0.26 +0.6
2,956,592 - PS417_13440 0.31 +0.2
2,956,810 + PS417_13440 0.47 +1.8
2,956,810 + PS417_13440 0.47 -0.2
2,956,811 - PS417_13440 0.47 -0.4
2,956,819 + PS417_13440 0.47 +0.5
2,957,103 - -1.2
2,957,196 + PS417_13440 0.75 +0.0
2,957,291 - PS417_13440 0.82 +1.9
2,957,407 + -0.6
2,957,411 + +0.8
2,957,411 + +0.1
2,957,411 + +0.7
2,957,412 - +0.4
2,957,412 - -0.3
2,957,491 + +0.1
2,957,533 + -0.1
2,957,902 + PS417_13445 0.32 +0.1
2,958,342 + +0.8
2,958,480 + PS417_13445 0.85 +0.2

Or see this region's nucleotide sequence