Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11045 and PS417_11050 are separated by 145 nucleotides PS417_11050 and PS417_11055 are separated by 140 nucleotides PS417_11055 and PS417_11060 are separated by 101 nucleotides
PS417_11045: PS417_11045 - 3-oxoacyl-ACP reductase, at 2,367,888 to 2,368,655
_11045
PS417_11050: PS417_11050 - glutathione S-transferase, at 2,368,801 to 2,369,397
_11050
PS417_11055: PS417_11055 - AraC family transcriptional regulator, at 2,369,538 to 2,370,500
_11055
PS417_11060: PS417_11060 - transporter, at 2,370,602 to 2,371,825
_11060
Position (kb)
2369
2370
2371 Strain fitness (log2 ratio)
-1
0
1
2 at 2368.631 kb on + strand at 2368.739 kb on + strand at 2368.739 kb on + strand at 2368.739 kb on + strand at 2369.299 kb on + strand, within PS417_11050 at 2369.362 kb on + strand at 2369.362 kb on + strand at 2369.363 kb on - strand at 2369.366 kb on + strand at 2369.627 kb on + strand at 2369.627 kb on + strand at 2369.627 kb on + strand at 2369.628 kb on - strand at 2369.629 kb on + strand at 2369.777 kb on + strand, within PS417_11055 at 2370.166 kb on - strand, within PS417_11055 at 2370.282 kb on - strand, within PS417_11055 at 2370.356 kb on - strand, within PS417_11055 at 2370.356 kb on - strand, within PS417_11055 at 2370.559 kb on - strand at 2370.717 kb on - strand at 2371.071 kb on + strand, within PS417_11060 at 2371.115 kb on - strand, within PS417_11060 at 2371.290 kb on + strand, within PS417_11060 at 2371.320 kb on - strand, within PS417_11060 at 2371.320 kb on - strand, within PS417_11060 at 2371.437 kb on + strand, within PS417_11060
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,368,631 + +0.8 2,368,739 + -0.7 2,368,739 + -1.7 2,368,739 + -1.5 2,369,299 + PS417_11050 0.83 +0.9 2,369,362 + -0.9 2,369,362 + +0.0 2,369,363 - -0.8 2,369,366 + +0.1 2,369,627 + +0.1 2,369,627 + -1.5 2,369,627 + +0.4 2,369,628 - -0.1 2,369,629 + -1.0 2,369,777 + PS417_11055 0.25 -0.9 2,370,166 - PS417_11055 0.65 -1.1 2,370,282 - PS417_11055 0.77 +1.0 2,370,356 - PS417_11055 0.85 +0.6 2,370,356 - PS417_11055 0.85 +2.0 2,370,559 - +0.6 2,370,717 - +1.7 2,371,071 + PS417_11060 0.38 +1.3 2,371,115 - PS417_11060 0.42 +0.8 2,371,290 + PS417_11060 0.56 +0.9 2,371,320 - PS417_11060 0.59 -1.2 2,371,320 - PS417_11060 0.59 -1.4 2,371,437 + PS417_11060 0.68 +0.1
Or see this region's nucleotide sequence