Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06180 and PS417_06185 are separated by 33 nucleotides PS417_06185 and PS417_06190 are separated by 213 nucleotides
PS417_06180: PS417_06180 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 1,370,166 to 1,371,200
_06180
PS417_06185: PS417_06185 - ArsC family transcriptional regulator, at 1,371,234 to 1,371,596
_06185
PS417_06190: PS417_06190 - sodium:proton antiporter, at 1,371,810 to 1,373,453
_06190
Position (kb)
1371
1372 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1371.236 kb on - strand at 1371.258 kb on - strand at 1371.258 kb on - strand at 1371.691 kb on + strand at 1371.691 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.728 kb on + strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.729 kb on - strand at 1371.739 kb on + strand at 1371.740 kb on - strand at 1371.740 kb on - strand at 1371.809 kb on + strand at 1371.822 kb on + strand at 1371.952 kb on + strand at 1371.952 kb on + strand at 1371.953 kb on - strand at 1372.131 kb on - strand, within PS417_06190 at 1372.495 kb on - strand, within PS417_06190 at 1372.495 kb on - strand, within PS417_06190
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,371,236 - -1.6 1,371,258 - -0.5 1,371,258 - +3.1 1,371,691 + -0.5 1,371,691 + -0.7 1,371,728 + -0.4 1,371,728 + -0.4 1,371,728 + +0.4 1,371,728 + +1.8 1,371,728 + -0.6 1,371,728 + -0.8 1,371,729 - -1.3 1,371,729 - -1.0 1,371,729 - +1.3 1,371,729 - -0.9 1,371,739 + -1.2 1,371,740 - +0.3 1,371,740 - +1.9 1,371,809 + +0.4 1,371,822 + -0.1 1,371,952 + +0.9 1,371,952 + -0.1 1,371,953 - -0.6 1,372,131 - PS417_06190 0.20 +0.7 1,372,495 - PS417_06190 0.42 +1.2 1,372,495 - PS417_06190 0.42 -2.0
Or see this region's nucleotide sequence