Strain Fitness in Pseudomonas simiae WCS417 around PS417_06185

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06180 and PS417_06185 are separated by 33 nucleotidesPS417_06185 and PS417_06190 are separated by 213 nucleotides PS417_06180: PS417_06180 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 1,370,166 to 1,371,200 _06180 PS417_06185: PS417_06185 - ArsC family transcriptional regulator, at 1,371,234 to 1,371,596 _06185 PS417_06190: PS417_06190 - sodium:proton antiporter, at 1,371,810 to 1,373,453 _06190 Position (kb) 1371 1372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1371.236 kb on - strandat 1371.258 kb on - strandat 1371.258 kb on - strandat 1371.691 kb on + strandat 1371.691 kb on + strandat 1371.728 kb on + strandat 1371.728 kb on + strandat 1371.728 kb on + strandat 1371.728 kb on + strandat 1371.728 kb on + strandat 1371.728 kb on + strandat 1371.729 kb on - strandat 1371.729 kb on - strandat 1371.729 kb on - strandat 1371.729 kb on - strandat 1371.739 kb on + strandat 1371.740 kb on - strandat 1371.740 kb on - strandat 1371.809 kb on + strandat 1371.822 kb on + strandat 1371.952 kb on + strandat 1371.952 kb on + strandat 1371.953 kb on - strandat 1372.131 kb on - strand, within PS417_06190at 1372.495 kb on - strand, within PS417_06190at 1372.495 kb on - strand, within PS417_06190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
1,371,236 - -1.6
1,371,258 - -0.5
1,371,258 - +3.1
1,371,691 + -0.5
1,371,691 + -0.7
1,371,728 + -0.4
1,371,728 + -0.4
1,371,728 + +0.4
1,371,728 + +1.8
1,371,728 + -0.6
1,371,728 + -0.8
1,371,729 - -1.3
1,371,729 - -1.0
1,371,729 - +1.3
1,371,729 - -0.9
1,371,739 + -1.2
1,371,740 - +0.3
1,371,740 - +1.9
1,371,809 + +0.4
1,371,822 + -0.1
1,371,952 + +0.9
1,371,952 + -0.1
1,371,953 - -0.6
1,372,131 - PS417_06190 0.20 +0.7
1,372,495 - PS417_06190 0.42 +1.2
1,372,495 - PS417_06190 0.42 -2.0

Or see this region's nucleotide sequence