Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17685 and PS417_17690 overlap by 4 nucleotides PS417_17690 and PS417_17700 are separated by 779 nucleotides
PS417_17685: PS417_17685 - allantoate amidohydrolase, at 3,859,824 to 3,861,092
_17685
PS417_17690: PS417_17690 - amidase, at 3,861,089 to 3,862,492
_17690
PS417_17700: PS417_17700 - LysR family transcriptional regulator, at 3,863,272 to 3,864,135
_17700
Position (kb)
3861
3862
3863 Strain fitness (log2 ratio)
-1
0
1 at 3860.285 kb on + strand, within PS417_17685 at 3861.197 kb on + strand at 3861.507 kb on - strand, within PS417_17690 at 3861.684 kb on - strand, within PS417_17690 at 3862.100 kb on - strand, within PS417_17690 at 3862.200 kb on - strand, within PS417_17690 at 3862.206 kb on + strand, within PS417_17690 at 3862.207 kb on - strand, within PS417_17690 at 3862.207 kb on - strand, within PS417_17690 at 3862.207 kb on - strand, within PS417_17690 at 3862.389 kb on + strand at 3862.389 kb on + strand at 3862.390 kb on - strand at 3862.496 kb on - strand at 3862.526 kb on + strand at 3862.527 kb on - strand at 3862.790 kb on - strand at 3862.971 kb on + strand at 3863.187 kb on + strand at 3863.240 kb on - strand at 3863.240 kb on - strand at 3863.469 kb on - strand, within PS417_17700 at 3863.469 kb on - strand, within PS417_17700 at 3863.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,860,285 + PS417_17685 0.36 -0.5 3,861,197 + -1.0 3,861,507 - PS417_17690 0.30 -0.8 3,861,684 - PS417_17690 0.42 -0.7 3,862,100 - PS417_17690 0.72 -1.4 3,862,200 - PS417_17690 0.79 -0.5 3,862,206 + PS417_17690 0.80 -1.2 3,862,207 - PS417_17690 0.80 +0.0 3,862,207 - PS417_17690 0.80 +0.2 3,862,207 - PS417_17690 0.80 -0.9 3,862,389 + +0.9 3,862,389 + -0.1 3,862,390 - +1.4 3,862,496 - +0.1 3,862,526 + -0.2 3,862,527 - -0.5 3,862,790 - -0.1 3,862,971 + +0.2 3,863,187 + +0.6 3,863,240 - -0.8 3,863,240 - +0.2 3,863,469 - PS417_17700 0.23 +0.6 3,863,469 - PS417_17700 0.23 +0.4 3,863,469 - -0.4
Or see this region's nucleotide sequence