Strain Fitness in Escherichia coli BW25113 around b2819
Experiment: P2 dilution 10-3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P2 dilution 10-3 |
---|---|---|---|---|---|
remove | |||||
2,947,748 | + | argA | b2818 | 0.36 | +0.1 |
2,947,766 | + | argA | b2818 | 0.38 | -0.2 |
2,947,782 | - | argA | b2818 | 0.39 | -0.2 |
2,947,782 | - | argA | b2818 | 0.39 | +0.4 |
2,947,783 | + | argA | b2818 | 0.39 | +0.6 |
2,948,091 | + | argA | b2818 | 0.62 | +0.6 |
2,948,357 | + | argA | b2818 | 0.82 | +1.1 |
2,948,415 | - | argA | b2818 | 0.86 | +0.1 |
2,948,474 | + | +0.6 | |||
2,948,480 | - | -0.2 | |||
2,948,485 | + | +0.4 | |||
2,948,493 | - | -0.2 | |||
2,948,557 | - | +1.8 | |||
2,948,584 | + | -0.9 | |||
2,948,592 | - | -0.7 | |||
2,948,592 | - | +0.2 | |||
2,948,630 | - | +0.3 | |||
2,948,689 | - | -0.2 | |||
2,948,698 | + | -3.6 | |||
2,948,711 | - | -3.9 | |||
2,948,975 | + | recD | b2819 | 0.17 | -3.5 |
2,948,983 | - | recD | b2819 | 0.18 | -4.6 |
2,948,985 | + | recD | b2819 | 0.18 | -2.8 |
2,948,988 | - | recD | b2819 | 0.18 | -2.6 |
2,949,122 | + | recD | b2819 | 0.25 | -4.0 |
2,949,124 | + | recD | b2819 | 0.26 | -3.4 |
2,949,124 | + | recD | b2819 | 0.26 | -2.0 |
2,949,159 | + | recD | b2819 | 0.27 | -4.1 |
2,949,159 | + | recD | b2819 | 0.27 | -3.4 |
2,949,559 | - | recD | b2819 | 0.49 | -5.0 |
2,949,564 | - | recD | b2819 | 0.50 | -4.1 |
2,949,648 | + | recD | b2819 | 0.54 | -3.6 |
2,949,648 | - | recD | b2819 | 0.54 | -4.6 |
2,949,648 | - | recD | b2819 | 0.54 | -5.8 |
2,949,658 | + | recD | b2819 | 0.55 | -3.0 |
2,949,691 | - | recD | b2819 | 0.57 | -1.8 |
2,949,691 | - | recD | b2819 | 0.57 | -2.1 |
2,949,911 | - | recD | b2819 | 0.69 | -4.2 |
2,950,492 | + | -4.5 | |||
2,950,492 | + | -2.3 | |||
2,950,500 | - | -0.7 | |||
2,951,352 | - | recB | b2820 | 0.25 | -0.0 |
Or see this region's nucleotide sequence