Experiment: Growth at pH8 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5668 and PP_5669 overlap by 1 nucleotides PP_5669 and PP_4242 are separated by 228 nucleotides PP_4242 and PP_4243 are separated by 136 nucleotides
PP_5668: PP_5668 - conserved membrane protein of unknown function, at 4,815,632 to 4,816,375
_5668
PP_5669: PP_5669 - ABC transporter related, at 4,816,375 to 4,817,076
_5669
PP_4242: PP_4242 - conserved protein of unknown function with Rhs repeat-associated core domain, at 4,817,305 to 4,818,099
_4242
PP_4243: PP_4243 - non-ribosomal peptide synthase (subunit of ferribactin synthase), at 4,818,236 to 4,831,189
_4243
Position (kb) 4817
4818
4819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4816.389 kb on + strand at 4816.452 kb on - strand, within PP_5669 at 4816.617 kb on + strand, within PP_5669 at 4816.727 kb on - strand, within PP_5669 at 4816.765 kb on + strand, within PP_5669 at 4816.783 kb on + strand, within PP_5669 at 4816.808 kb on + strand, within PP_5669 at 4816.871 kb on - strand, within PP_5669 at 4816.872 kb on + strand, within PP_5669 at 4816.872 kb on + strand, within PP_5669 at 4816.873 kb on - strand, within PP_5669 at 4816.873 kb on - strand, within PP_5669 at 4816.874 kb on + strand, within PP_5669 at 4816.922 kb on + strand, within PP_5669 at 4816.970 kb on - strand, within PP_5669 at 4817.062 kb on - strand at 4817.272 kb on - strand at 4817.275 kb on + strand at 4817.579 kb on + strand, within PP_4242 at 4817.579 kb on + strand, within PP_4242 at 4817.634 kb on - strand, within PP_4242 at 4817.634 kb on - strand, within PP_4242 at 4817.646 kb on + strand, within PP_4242 at 4817.647 kb on - strand, within PP_4242 at 4817.651 kb on - strand, within PP_4242 at 4817.651 kb on - strand, within PP_4242 at 4817.681 kb on + strand, within PP_4242 at 4817.682 kb on - strand, within PP_4242 at 4817.706 kb on + strand, within PP_4242 at 4817.707 kb on - strand, within PP_4242 at 4817.770 kb on - strand, within PP_4242 at 4817.912 kb on + strand, within PP_4242 at 4817.913 kb on - strand, within PP_4242 at 4817.923 kb on + strand, within PP_4242 at 4817.973 kb on - strand, within PP_4242 at 4818.033 kb on + strand at 4818.045 kb on - strand at 4818.074 kb on + strand at 4818.075 kb on - strand at 4818.095 kb on - strand at 4818.098 kb on - strand at 4818.103 kb on + strand at 4818.317 kb on + strand at 4818.317 kb on + strand at 4818.317 kb on + strand at 4818.318 kb on - strand at 4818.318 kb on - strand at 4818.318 kb on - strand at 4818.318 kb on - strand at 4818.321 kb on + strand at 4818.321 kb on + strand at 4818.383 kb on + strand at 4818.383 kb on + strand at 4818.384 kb on - strand at 4818.496 kb on + strand at 4818.651 kb on + strand at 4818.651 kb on + strand at 4818.652 kb on - strand at 4818.652 kb on - strand at 4818.652 kb on - strand at 4818.735 kb on + strand at 4818.883 kb on - strand at 4818.925 kb on + strand at 4818.930 kb on + strand at 4818.931 kb on - strand at 4819.002 kb on + strand at 4819.002 kb on + strand at 4819.002 kb on + strand at 4819.013 kb on + strand at 4819.014 kb on - strand at 4819.086 kb on + strand at 4819.086 kb on + strand at 4819.086 kb on + strand at 4819.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH8 and (C) Trisodium citrate remove 4,816,389 + +0.9 4,816,452 - PP_5669 0.11 +1.8 4,816,617 + PP_5669 0.34 -2.4 4,816,727 - PP_5669 0.50 +0.6 4,816,765 + PP_5669 0.56 -3.2 4,816,783 + PP_5669 0.58 +0.7 4,816,808 + PP_5669 0.62 +0.7 4,816,871 - PP_5669 0.71 +2.0 4,816,872 + PP_5669 0.71 +1.0 4,816,872 + PP_5669 0.71 -2.3 4,816,873 - PP_5669 0.71 +1.0 4,816,873 - PP_5669 0.71 +0.4 4,816,874 + PP_5669 0.71 +1.1 4,816,922 + PP_5669 0.78 -2.9 4,816,970 - PP_5669 0.85 +1.0 4,817,062 - +0.7 4,817,272 - +0.1 4,817,275 + -0.6 4,817,579 + PP_4242 0.34 -0.1 4,817,579 + PP_4242 0.34 +0.3 4,817,634 - PP_4242 0.41 -1.4 4,817,634 - PP_4242 0.41 -2.2 4,817,646 + PP_4242 0.43 +0.1 4,817,647 - PP_4242 0.43 +0.2 4,817,651 - PP_4242 0.44 -1.9 4,817,651 - PP_4242 0.44 +0.4 4,817,681 + PP_4242 0.47 +0.1 4,817,682 - PP_4242 0.47 -1.7 4,817,706 + PP_4242 0.50 -1.3 4,817,707 - PP_4242 0.51 -1.3 4,817,770 - PP_4242 0.58 -0.5 4,817,912 + PP_4242 0.76 -1.9 4,817,913 - PP_4242 0.76 -1.2 4,817,923 + PP_4242 0.78 -1.1 4,817,973 - PP_4242 0.84 -0.9 4,818,033 + +1.8 4,818,045 - -0.6 4,818,074 + +0.3 4,818,075 - -0.8 4,818,095 - -2.4 4,818,098 - +0.4 4,818,103 + +0.8 4,818,317 + +0.3 4,818,317 + -0.1 4,818,317 + +0.9 4,818,318 - -1.0 4,818,318 - -1.9 4,818,318 - +0.7 4,818,318 - +1.2 4,818,321 + -1.5 4,818,321 + +0.1 4,818,383 + -3.4 4,818,383 + +0.2 4,818,384 - -0.7 4,818,496 + +1.4 4,818,651 + +1.0 4,818,651 + +0.2 4,818,652 - -1.9 4,818,652 - -0.1 4,818,652 - -3.4 4,818,735 + -0.1 4,818,883 - +0.5 4,818,925 + +1.1 4,818,930 + +0.1 4,818,931 - -2.5 4,819,002 + -0.2 4,819,002 + -1.6 4,819,002 + +0.1 4,819,013 + +1.1 4,819,014 - -2.3 4,819,086 + +0.4 4,819,086 + +1.8 4,819,086 + -0.1 4,819,087 - -1.5
Or see this region's nucleotide sequence